RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PPIEQ9UNP9 301 aaKnown RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TNPO3Q9Y5L0 923 aaKnown RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TRBV11-1A0A0K0K1C0 115 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 TMEM200CA6NKL6 621 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 WASHC1A8K0Z3 465 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 A8MT66 165 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 STX16-NPEPL1H3BU86 382 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 STX16O14662 325 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 UGDHO60701 494 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 CTNSO60931 367 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 EEDO75530 441 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 RPS17P08708 135 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 EDN3P14138 238 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 TSPAN8P19075 237 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 SERPINB1P30740 379 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 HPDP32754 393 aaPredicted RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 PIK3CBP42338 1070 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 SSR2P43308 183 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 HNRNPH2P55795 449 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 TGM3Q08188 693 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 SLAMF1Q13291 335 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 TSNAXIP1Q2TAA8 658 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 C18orf63Q68DL7 685 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 CHSY3Q70JA7 882 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 LGI4Q8N135 537 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 ARMC10Q8N2F6 343 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 ARMC2Q8NEN0 867 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 ADAMTS18Q8TE60 1221 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 THAP3Q8WTV1 239 aaPredicted RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 PTPMT1Q8WUK0 201 aaPredicted RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 SREK1Q8WXA9 508 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 NR4A3Q92570 626 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 MTFMTQ96DP5 389 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 UTP23Q9BRU9 249 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 L2HGDHQ9H9P8 463 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 LIN28AQ9H9Z2 209 aaKnown RBP17.78■□□□□ 0.44
SF3A1-202ENST00000411423 PCDHGA11Q9Y5H2 935 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 HIVEP3Q5T1R4 2406 aa17.78■□□□□ 0.44
SF3A1-202ENST00000411423 CLDN4O14493 209 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 TMPRSS11DO60235 418 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 FGF17O60258 216 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 RASAL1O95294 804 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 BSGP35613 385 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 KCNK10P57789 538 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 TAS2R50P59544 299 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 INAQ16352 499 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 AP5B1Q2VPB7 878 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 METTL2BQ6P1Q9 378 aaKnown RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 DGAT2L6Q6ZPD8 337 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 OR4N5Q8IXE1 308 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 SRFBP1Q8NEF9 429 aaKnown RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF483Q8TF39 744 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 SSC4DQ8WTU2 575 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 MRPL57Q9BQC6 102 aaKnown RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ALOXE3Q9BYJ1 711 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ROGDIQ9GZN7 287 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 MRPL46Q9H2W6 279 aaKnown RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ADAP2Q9NPF8 381 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 SEMA4BQ9NPR2 832 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF225Q9UK10 706 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 ATG4BQ9Y4P1 393 aa17.77■□□□□ 0.44
SF3A1-202ENST00000411423 WIPF3A6NGB9 483 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 CLDN9O95484 217 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 LDLRP01130 860 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 SHBGP04278 402 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 CPN2P22792 545 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 CDH13P55290 713 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 TERF2Q15554 542 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 MRM1Q6IN84 353 aaKnown RBP17.76■□□□□ 0.43
SF3A1-202ENST00000411423 OR4F6Q8NGB9 312 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 RGMAQ96B86 450 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 NTMT1Q9BV86 223 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 DEFB126Q9BYW3 111 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 PRM3Q9NNZ6 103 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 LRFN1Q9P244 771 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 ABI3Q9P2A4 366 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 VTI1BQ9UEU0 232 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 ADGRE2Q9UHX3 823 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 OSGIN2Q9Y236 505 aa17.76■□□□□ 0.43
SF3A1-202ENST00000411423 MRPS33Q9Y291 106 aaKnown RBP17.76■□□□□ 0.43
SF3A1-202ENST00000411423 USP9YO00507 2555 aaPredicted RBP17.76■□□□□ 0.43
SF3A1-202ENST00000411423 NBPF19A0A087WUL8 3843 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 A0A0A6YYD5 115 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 GOLGA8RI6L899 631 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 SMIM24O75264 130 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 DDAH2O95865 285 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 GBAP04062 536 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 SP1P08047 785 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 CLCN2P51788 898 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 CCNG1P51959 295 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 RAP1GDS1P52306 607 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 IGLV3-21P80748 117 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 OC90Q02509 493 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 ELAVL1Q15717 326 aaKnown RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 TEX35Q5T0J7 233 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 LETMD1Q6P1Q0 360 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 GALNTL5Q7Z4T8 443 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 ZCCHC7Q8N3Z6 543 aaKnown RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 SUN3Q8TAQ9 357 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 DOK4Q8TEW6 326 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms