RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 AGPAT4Q9NRZ5 378 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 OCIAD1Q9NX40 245 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 AKAP7Q9P0M2 348 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 SLAMF8Q9P0V8 285 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 ANAPC2Q9UJX6 822 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 PLCL2Q9UPR0 1127 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 LOC105369274A0A096LPK9 316 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 LOC102723532A0A0G2JNH3 316 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 ZCCHC18P0CG32 403 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 BCKDHAP12694 445 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 BCL6P41182 706 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GABRA4P48169 554 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 DGKQP52824 942 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 RPS15AP62244 130 aaKnown RBP12.75□□□□□ -0.37
LIMS1-204ENST00000409441 CYP4F3Q08477 520 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 PTGR1Q14914 329 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GPR19Q15760 415 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 MAPKAPK3Q16644 382 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 FRMPD2BQ6IN97 320 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GRHL2Q6ISB3 625 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 MED27Q6P2C8 311 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 RNF44Q7L0R7 432 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 RAB11FIP2Q7L804 512 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 TMPRSS7Q7RTY8 843 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 IFNEQ86WN2 208 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 MARCH9Q86YJ5 346 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 OR4N4Q8N0Y3 316 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GALNT15Q8N3T1 639 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GALNT4Q8N4A0 578 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 MFSD9Q8NBP5 474 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 GTF2H4Q92759 462 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 UBE2E3Q969T4 207 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 CCDC115Q96NT0 180 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 SEMA6AQ9H2E6 1030 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 SYNPO2LQ9H987 977 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 FGF21Q9NSA1 209 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 PCDHGA11Q9Y5H2 935 aa12.75□□□□□ -0.37
LIMS1-204ENST00000409441 EFCAB7A8K855 629 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 H0YGG7 62 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 H0YIV9 168 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 SRPX2O60687 465 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 ERN1O75460 977 aaKnown RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 PGRP06401 933 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 CCL4P13236 92 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 HSD3B1P14060 373 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 HSD3B2P26439 372 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 ARF3P61204 181 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 ACY1Q03154 408 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 CYP51A1Q16850 503 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 DEFB110Q30KQ9 67 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 FAM174BQ3ZCQ3 159 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 FRG2Q64ET8 278 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 AMIGO2Q86SJ2 522 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 LAS2Q8IYD9 372 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 ANKRD53Q8N9V6 530 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 OR7G3Q8NG95 312 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 POP5Q969H6 163 aaKnown RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 RERGQ96A58 199 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 TESCQ96BS2 214 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 THAP11Q96EK4 314 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 LIN37Q96GY3 246 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 CENPNQ96H22 339 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-204ENST00000409441 NSMCE2Q96MF7 247 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 GBP5Q96PP8 586 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 FRG2BQ96QU4 278 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 OR6C1Q96RD1 312 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 C9orf16Q9BUW7 83 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 AURKCQ9UQB9 309 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 MAN2B2Q9Y2E5 1009 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 LOXL2Q9Y4K0 774 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 NEUROG3Q9Y4Z2 214 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 PCDHGA4Q9Y5G9 962 aa12.74□□□□□ -0.37
LIMS1-204ENST00000409441 PRMT3O60678 531 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 GMNNO75496 209 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SNRNP200O75643 2136 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TNFAIP8O95379 198 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 EIF2S1P05198 315 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CTSBP07858 339 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 MSL3P1P0C860 447 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 PCNAP12004 261 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 AHRP35869 848 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ID4P47928 161 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 NEK2P51955 445 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 VSX2P58304 361 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TXNL4AP83876 142 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SPANXN4Q5MJ08 99 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 GLYATQ6IB77 296 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ZBTB49Q6ZSB9 765 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 BMPERQ8N8U9 685 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 OR52E4Q8NGH9 312 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 MTFMTQ96DP5 389 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CENPKQ9BS16 269 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 RHBGQ9H310 441 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ZNF696Q9H7X3 374 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 RMND5AQ9H871 391 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SIDT1Q9NXL6 827 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SERTAD3Q9UJW9 196 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 AP1M2Q9Y6Q5 423 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SPEGQ15772 3267 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CCDC187A0A096LP49 1063 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms