RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SH3BP4Q9P0V3 963 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 MRPS33Q9Y291 106 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 PCDHGA3Q9Y5H0 932 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 PCDHA9Q9Y5H5 950 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 C1orf226A1L170 272 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 FAM234BA2RU67 622 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 GLOD5A6NK44 160 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 FAM227AF5H4B4 570 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 MEN1O00255 615 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 SEC16AO15027 2179 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 SCAMP2O15127 329 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 SLC22A2O15244 555 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 STK17BO94768 372 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 XCR1P46094 333 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 KCNK10P57789 538 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 ACTN3Q08043 901 aaPredicted RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 PUM1Q14671 1186 aaKnown RBP eCLIP17.06■□□□□ 0.32
SDC1-203ENST00000403076 GK5Q6ZS86 529 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 TRPM8Q7Z2W7 1104 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 TICAM1Q8IUC6 712 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 GALNT6Q8NCL4 622 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 OR7A2PQ8NGA2 310 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 ADAMTS18Q8TE60 1221 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 NUDT8Q8WV74 236 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 MR1Q95460 341 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 PPCDCQ96CD2 204 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 RBCK1Q9BYM8 510 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 RPF2Q9H7B2 306 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 PCDHGA8Q9Y5G5 932 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 C9orf172C9J069 976 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 NR5A2O00482 541 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 PRKRAO75569 313 aaKnown RBP17.05■□□□□ 0.32
SDC1-203ENST00000403076 DDX5P17844 614 aaKnown RBP17.05■□□□□ 0.32
SDC1-203ENST00000403076 DDCP20711 480 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 IL12AP29459 219 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 S100A3P33764 101 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 MAPRE2Q15555 327 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 CPTPQ5TA50 214 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 ANKRD26P1Q6NSI1 321 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 RIMKLAQ8IXN7 391 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 TBC1D20Q96BZ9 403 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 MTERF3Q96E29 417 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 CSF3RQ99062 836 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 CLMPQ9H6B4 373 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 TMEM45AQ9NWC5 275 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 IFT80Q9P2H3 777 aaPredicted RBP17.05■□□□□ 0.32
SDC1-203ENST00000403076 PSME2Q9UL46 239 aa17.05■□□□□ 0.32
SDC1-203ENST00000403076 LOC100653049A0A140TA62 436 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 CCT8L1PA6NM43 557 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 GABRR3A8MPY1 467 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 B4GALT2O60909 372 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 KRT34O76011 436 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 FURINP09958 794 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 ITGAXP20702 1163 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 RORAP35398 523 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 C21orf58P58505 322 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 OCA2Q04671 838 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 SRSF11Q05519 484 aaKnown RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 FOXC1Q12948 553 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 ERV3-1Q14264 604 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 UGT8Q16880 541 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 DPY19L1Q2PZI1 675 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 FAM174BQ3ZCQ3 159 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 MFSD4BQ5TF39 518 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 MLIPQ5VWP3 458 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 C6orf15Q6UXA7 325 aaPredicted RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 TREML1Q86YW5 311 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 FUNDC1Q8IVP5 155 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 SHISA5Q8N114 240 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 UCN3Q969E3 161 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 EXOSC8Q96B26 276 aaKnown RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 TESCQ96BS2 214 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 LRFN5Q96NI6 719 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 DPH2Q9BQC3 489 aaPredicted RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 MKKSQ9NPJ1 570 aaPredicted RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 ATAD3AQ9NVI7 634 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 FOXJ2Q9P0K8 574 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 C5AR2Q9P296 337 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 ZNF282Q9UDV7 671 aaPredicted RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 GPN3Q9UHW5 284 aaPredicted RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 ATP6V1HQ9UI12 483 aa17.04■□□□□ 0.32
SDC1-203ENST00000403076 EXO1Q9UQ84 846 aaKnown RBP17.04■□□□□ 0.32
SDC1-203ENST00000403076 PIEZO1Q92508 2521 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 TEX51A0A1B0GUA7 166 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 CYR61O00622 381 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 CLDN4O14493 209 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 PGRMC2O15173 223 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 ERAL1O75616 437 aaKnown RBP17.03■□□□□ 0.32
SDC1-203ENST00000403076 FHP07954 510 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 CCNYL3P0C7X3 344 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 KIR3DL1P43629 444 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 DGKQP52824 942 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 SPANXN4Q5MJ08 99 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 ZNF385CQ66K41 422 aaPredicted RBP17.03■□□□□ 0.32
SDC1-203ENST00000403076 OR52E8Q6IFG1 317 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 BLOC1S3Q6QNY0 202 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 SNX32Q86XE0 403 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 KLHL29Q96CT2 875 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 GIMAP4Q9NUV9 329 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 EHD3Q9NZN3 535 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms