RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 B4DGG1 531 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF821O75541 412 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TNFP01375 233 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HOXC12P31275 282 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CDKN1CP49918 316 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CDKN2DP55273 166 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CLDN10P78369 228 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF252P-AS1Q0IIN9 211 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 C6orf183Q5T699 404 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MAMDC4Q6UXC1 1216 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ARMCX6Q7L4S7 300 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 KBTBD6Q86V97 674 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CCDC116Q8IYX3 515 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TRUB1Q8WWH5 349 aaKnown RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SPATA9Q9BWV2 254 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ABCG2Q9UNQ0 655 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF878C9JN71 531 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CSTBP04080 98 aaKnown RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 EDNRBP24530 442 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 HSD11B1P28845 292 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ABRAXAS2Q15018 415 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 TEAD2Q15562 447 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CTC1Q2NKJ3 1217 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 GXYLT1Q4G148 440 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF805Q5CZA5 627 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PLEKHG7Q6ZR37 379 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ISCA2Q86U28 154 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF227Q86WZ6 799 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CMTR2Q8IYT2 770 aaKnown RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 LNX2Q8N448 690 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 TMIEQ8NEW7 156 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 STRA6Q9BX79 667 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 METTL8Q9H825 291 aaKnown RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 FAM118AQ9NWS6 357 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 EXTL2Q9UBQ6 330 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SCP2D1Q9UJQ7 156 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 FBXO9Q9UK97 447 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 NOP16Q9Y3C1 178 aaKnown RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PTGDR2Q9Y5Y4 395 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 LRRN3E7EW58 273 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 AURKAO14965 403 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 GMPRP36959 345 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SH3BP2P78314 561 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PIGFQ07326 219 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CHAF1BQ13112 559 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 DOC2AQ14183 400 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PUS10Q3MIT2 529 aaKnown RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 TMEM236Q5W0B7 351 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CES4AQ5XG92 561 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PPP2R2DQ66LE6 453 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SETD6Q8TBK2 473 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 NXPE2Q96DL1 559 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 BIRC8Q96P09 236 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 RBP7Q96R05 134 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 LRRN3Q9H3W5 708 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 HSPE1-MOB4S4R3N1 261 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ZCWPW2A0A1B0GU75 182 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ZSCAN5BA6NJL1 495 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 LEFTY1O75610 366 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CKMT1AP12532 417 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 BMP2P12643 396 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SHMT2P34897 504 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ETV4P43268 484 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 MAP2K4P45985 399 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 PDX1P52945 283 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CRISP1P54107 249 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 MLLT1Q03111 559 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 MAD2L1BPQ15013 274 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 FAM214AQ32MH5 1076 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 CMPK2Q5EBM0 449 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 LIPKQ5VXJ0 399 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 GPRIN1Q7Z2K8 1008 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 GRASPQ7Z6J2 395 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SERINC5Q86VE9 423 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 NPWQ8N729 165 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 SAMD12Q8N8I0 201 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 TSTD1Q8NFU3 115 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 FNDC8Q8TC99 324 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 NSMAFQ92636 917 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 IGSF21Q96ID5 467 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ACTL8Q9H568 366 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF451Q9Y4E5 1061 aa10.98□□□□□ -0.65
PTPRF-203ENST00000372407 ASGR2P07307 311 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 IL3P08700 152 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 DHRS4L1P0CG22 281 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 GP1BBP13224 206 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 HLA-EP13747 358 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ACRV1P26436 265 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 MLLT3P42568 568 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 OC90Q02509 493 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PON2Q15165 354 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PYHIN1Q6K0P9 492 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 TRAM1L1Q8N609 369 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 OR2T33Q8NG76 320 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 OR10T2Q8NGX3 314 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PMM1Q92871 262 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ZC3H10Q96K80 434 aaKnown RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 MYRFLQ96LU7 910 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 SECISBP2Q96T21 854 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms