RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DENND6BQ8NEG7 585 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 OR9Q1Q8NGQ5 310 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 COQ8BQ96D53 544 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 NLNQ9BYT8 704 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 NDEL1Q9GZM8 345 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 C1GALT1Q9NS00 363 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TRPC4Q9UBN4 977 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 MALT1Q9UDY8 824 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 MUTYHQ9UIF7 546 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 ANGPT4Q9Y264 503 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 WBP11Q9Y2W2 641 aaKnown RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 SNX11Q9Y5W9 270 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 WNT6Q9Y6F9 365 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 PSIP1O75475 530 aaKnown RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 AP2A2O94973 939 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 FURINP09958 794 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 NPPBP16860 134 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 LIM2P55344 173 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 DSTNP60981 165 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 LSM11P83369 360 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TARDBPQ13148 414 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 RAB33AQ14088 237 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 CASP12Q6UXS9 341 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 GPR155Q7Z3F1 870 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 OR4C15Q8NGM1 316 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 BTN2A2Q8WVV5 523 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 GLYATL1Q969I3 302 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF486Q96H40 463 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 WFDC6Q9BQY6 131 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 HS3ST2Q9Y278 367 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 CARD8Q9Y2G2 431 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TMA7Q9Y2S6 64 aaKnown RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 ATG2BQ96BY7 2078 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TLX2O43763 284 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 C8AP07357 584 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 CLEC2LP0C7M8 214 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TIMP2P16035 220 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 NNMTP40261 264 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 OLR1P78380 273 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 PIN1Q13526 163 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 LRRC26Q2I0M4 334 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 FAM214AQ32MH5 1076 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TMEM215Q68D42 235 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TTC23LQ6PF05 361 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TMIGD1Q6UXZ0 262 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 SHFQ7M4L6 423 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 ADCK2Q7Z695 626 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 XAGE5Q8WWM1 108 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 HOXD1Q9GZZ0 328 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 CXorf36Q9H7Y0 433 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 ENPP4Q9Y6X5 453 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 FEZF1A0PJY2 475 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 GPR37L1O60883 481 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 POLR2EP19388 210 aaKnown RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 BMPR1AP36894 532 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 CCR2P41597 374 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PTPN5P54829 565 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 CAV3P56539 151 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 RACK1P63244 317 aaKnown RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 TLE2Q04725 743 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 SEC23BQ15437 767 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 FBXO43Q4G163 708 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PLAG1Q6DJT9 500 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 RAET1GQ6H3X3 334 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 LINC00299Q6ZSB3 139 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 LACC1Q8IV20 430 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 HORMAD2Q8N7B1 307 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 ZFP41Q8N8Y5 198 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 TRMT61AQ96FX7 289 aaKnown RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 TXNDC15Q96J42 360 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 TTYH2Q9BSA4 534 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PLCXD1Q9NUJ7 323 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 FBXL12Q9NXK8 326 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 ASF1AQ9Y294 204 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 YARS2Q9Y2Z4 477 aaKnown RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 EIF3FO00303 357 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 NME6O75414 186 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 CDRT1O95170 752 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 KRT75O95678 551 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 LATS1O95835 1130 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PTTG1O95997 202 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 ALDH1A1P00352 501 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 CTSLP07711 333 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 GABRB1P18505 474 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 DEFB103AP81534 67 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 RUNX1T1Q06455 604 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 NFE2L1Q14494 772 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 IRF3Q14653 427 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PUM1Q14671 1186 aaKnown RBP eCLIP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF697Q5TEC3 545 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 OXR1Q8N573 874 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 UBASH3BQ8TF42 649 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 UCN3Q969E3 161 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 ZFYVE19Q96K21 471 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 F2RL3Q96RI0 385 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 PRR14Q9BWN1 585 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 BHLHE41Q9C0J9 482 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-201ENST00000360535 BRF2Q9HAW0 419 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 KCNK12Q9HB15 430 aa11.57□□□□□ -0.56
CLIP3-201ENST00000360535 SMURF1Q9HCE7 757 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms