RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PCDH17O14917 1159 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 NARSO43776 548 aaKnown RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 SOCS5O75159 536 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 AHSA1O95433 338 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 H2AFB2P0C5Z0 115 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 CTSOP43234 321 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 GPR17Q13304 367 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 CYP27C1Q4G0S4 372 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 CEACAM19Q7Z692 300 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 SLC28A3Q9HAS3 691 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TMEM184CQ9NVA4 438 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 HTR3EA5X5Y0 456 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 A8MUA0 341 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 RHCEP18577 417 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TIA1P31483 386 aaKnown RBP eCLIP14.28□□□□□ -0.123e-9■■■■■ 42.3
CHD4-201ENST00000357008 MAGEA11P43364 429 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 MLLT10P55197 1068 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 SUSD1Q6UWL2 747 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 OR8S1Q8NH09 359 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 PHOSPHO1Q8TCT1 267 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TXLNGYQ9BZA5 131 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 CPNE5Q9HCH3 593 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TEX13CA0A0J9YWL9 993 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 IVDP26440 423 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 HK3P52790 923 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 FXYD6P3P58550 94 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 GHRHRQ02643 423 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 GRSF1Q12849 480 aaKnown RBP eCLIP14.28□□□□□ -0.12
CHD4-201ENST00000357008 PMS2P3Q13401 168 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 PLEKHN1Q494U1 663 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 C14orf80Q86SX3 495 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TSPYL5Q86VY4 417 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 SLAIN1Q8ND83 568 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 TCEAL4Q96EI5 215 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 RABL2AQ9UBK7 228 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 RABL2BQ9UNT1 228 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 ANKRD26Q9UPS8 1709 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 OXSR1O95747 527 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 STATHP02808 62 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 ADH5P11766 374 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 RPL10P27635 214 aaKnown RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 PREPP48147 710 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 SIX1Q15475 284 aaPredicted RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 CTU1Q7Z7A3 348 aaKnown RBP14.28□□□□□ -0.12
CHD4-201ENST00000357008 CD300LFQ8TDQ1 290 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 SLC2A13Q96QE2 648 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 B4GALT6Q9UBX8 382 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 FBXL3Q9UKT7 428 aa14.28□□□□□ -0.12
CHD4-201ENST00000357008 A6NHS1 94 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 C12orf71A8MTZ7 269 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 GP1BBP13224 206 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 GTF2F2P13984 249 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 GGT1P19440 569 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 HTR2AP28223 471 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 TMEM69Q5SWH9 247 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 PNCKQ6P2M8 343 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 CMTM8Q8IZV2 173 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 OR13J1Q8NGT2 312 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 MAFIPQ8WZ33 124 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 OVCA2Q8WZ82 227 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 ANKRD60Q9BZ19 345 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 ERVK13-1Q9NX77 482 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 MPC1LP0DKB6 136 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 RBMXP38159 391 aaKnown RBP14.27□□□□□ -0.12
CHD4-201ENST00000357008 SNTB2Q13425 540 aaKnown RBP14.27□□□□□ -0.12
CHD4-201ENST00000357008 UMODL1-AS1Q8N2C9 162 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 SLC15A4Q8N697 577 aa14.27□□□□□ -0.12
CHD4-201ENST00000357008 AFDNP55196 1824 aaKnown RBP14.27□□□□□ -0.12
CHD4-201ENST00000357008 FAM72CH0Y354 149 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 LDB2O43679 373 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 MMP20O60882 483 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 HAPLN1P10915 354 aaPredicted RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 FAM72AQ5TYM5 149 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 FAM72DQ6L9T8 149 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 PRSS48Q7RTY5 328 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 FAM72BQ86X60 149 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 HS3ST5Q8IZT8 346 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 PCDHB16Q9NRJ7 776 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 F5H0A9 414 aaPredicted RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 MRPL3P09001 348 aaKnown RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 EDNRBP24530 442 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 PON2Q15165 354 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 GDF6Q6KF10 455 aaPredicted RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 ZNF550Q7Z398 422 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 WDTC1Q8N5D0 677 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 TSNAXQ99598 290 aaKnown RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 ORAI3Q9BRQ5 295 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 Q9Y3F1 56 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 SOX2P48431 317 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 BMXP51813 675 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 SLC10A2Q12908 348 aaPredicted RBP14.27□□□□□ -0.13
CHD4-201ENST00000357008 PM20D2Q8IYS1 436 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 POTEKPQ9BYX7 375 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 MYNNQ9NPC7 610 aa14.27□□□□□ -0.13
CHD4-201ENST00000357008 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.26□□□□□ -0.13
CHD4-201ENST00000357008 SLC33A1O00400 549 aaPredicted RBP14.26□□□□□ -0.13
CHD4-201ENST00000357008 C1GALT1C1LP0DN25 315 aa14.26□□□□□ -0.13
CHD4-201ENST00000357008 MLLT3P42568 568 aaPredicted RBP14.26□□□□□ -0.13
CHD4-201ENST00000357008 TMEM115Q12893 351 aaPredicted RBP14.26□□□□□ -0.13
CHD4-201ENST00000357008 ABRAXAS2Q15018 415 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms