RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MRPL3P09001 348 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 HOXD8P13378 290 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 ALAS2P22557 587 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 SOX2P48431 317 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 ARHGAP1Q07960 439 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 GALNT1Q10472 559 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PPP2R2DQ66LE6 453 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 TPRG1Q6ZUI0 275 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC22A15Q8IZD6 547 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 GDPD1Q8N9F7 314 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CCM2Q9BSQ5 444 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 NAA50Q9GZZ1 169 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 MMP28Q9H239 520 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 RNF121Q9H920 327 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CD8B2A6NJW9 211 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 STATHP02808 62 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CD8BP10966 210 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 HK3P52790 923 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 TMCO2Q7Z6W1 182 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 FTMTQ8N4E7 242 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC22A17Q8WUG5 538 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PEX13Q92968 403 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PMEPA1Q969W9 287 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CLCC1Q96S66 551 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 GMLQ99445 158 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 TMEM185BQ9H7F4 350 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CHMP1AQ9HD42 196 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PCDHB11Q9Y5F2 797 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF670-ZNF695F2Z2N8 137 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 FXYD6P3P58550 94 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 SOBPA7XYQ1 873 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 AXIN1O15169 862 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 RBBP9O75884 186 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OCLNQ16625 522 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 GDPD4Q6W3E5 623 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC5A8Q8N695 610 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OR52E4Q8NGH9 312 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OR2T35Q8NGX2 323 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 TMEM125Q96AQ2 219 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC25A36Q96CQ1 311 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SYT11Q9BT88 431 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 GSKIPQ9P0R6 139 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 CCL16O15467 120 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 HSD17B2P37059 387 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 HTR6P50406 440 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 RASGEF1BQ0VAM2 473 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 WDR45BQ5MNZ6 344 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 GPRC6AQ5T6X5 926 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 KANK2Q63ZY3 851 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 PYHIN1Q6K0P9 492 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 CHADLQ6NUI6 762 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 NUP54Q7Z3B4 507 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 THEM6Q8WUY1 208 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 ZBTB20Q9HC78 741 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 ANKMY1Q9P2S6 941 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 ATPIF1Q9UII2 106 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 AGAP5A6NIR3 686 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 C8orf89P0DMQ9 161 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 PYCR1P32322 319 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 CAP1Q01518 475 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 GRSF1Q12849 480 aaKnown RBP eCLIP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 AIMP2Q13155 320 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 FADDQ13158 208 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 GTDC1Q4AE62 458 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 DENND6BQ8NEG7 585 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OR2L8Q8NGY9 312 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 C7orf34Q96L11 122 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SCGB3A2Q96PL1 93 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OR4K3Q96R72 315 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SPATA9Q9BWV2 254 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SRMSQ9H3Y6 488 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 B3GNT3Q9Y2A9 372 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 CFAP20Q9Y6A4 193 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 A0A1B0GVT2 93 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 A8MU76 341 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OAZ2O95190 189 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 VNN2O95498 520 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SCGB1D2O95969 90 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SNAP47Q5SQN1 464 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 BCL2L15Q5TBC7 163 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 PM20D2Q8IYS1 436 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 CHDHQ8NE62 594 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 OR8K3Q8NH51 312 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SUSD3Q96L08 255 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 SCML2Q9UQR0 700 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 WDR45Q9Y484 360 aa18.78■□□□□ 0.6
CCDC88B-202ENST00000356786 A0A0D9SEW6 157 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 FMO6PO60774 539 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 DUSP11O75319 330 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 CLDN8P56748 225 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 RIPPLY1Q0D2K3 151 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 SUSD1Q6UWL2 747 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 COMMD7Q86VX2 200 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 ASB15Q8WXK1 588 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 TCEAL4Q96EI5 215 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 PADI2Q9Y2J8 665 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 A0A0G2JLL6 359 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 PRKYO43930 277 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF20P17024 532 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms