RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 UCN3Q969E3 161 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 CCT7Q99832 543 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 LYARQ9NX58 379 aaKnown RBP20.86■□□□□ 0.93
SHMT1-203ENST00000354098 SIRT5Q9NXA8 310 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 MCM8Q9UJA3 840 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 SRRM3A6NNA2 597 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-203ENST00000354098 WASHC1A8K0Z3 465 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 TCP11X1B4DZS4 312 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 TIA1P31483 386 aaKnown RBP eCLIP20.86■□□□□ 0.93
SHMT1-203ENST00000354098 OTX2P32243 289 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 MDH1P40925 334 aaKnown RBP20.86■□□□□ 0.93
SHMT1-203ENST00000354098 HK2P52789 917 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 EMP2P54851 167 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 RHAGQ02094 409 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 SSPNQ14714 243 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 TUBB8Q3ZCM7 444 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 VWA5B1Q5TIE3 1220 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 TM4SF18Q96CE8 201 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 TUBGCP3Q96CW5 907 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 GNG14A0A1W2PPG7 69 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 HDAC3O15379 428 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 PRKAR1AP10644 381 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 JAK1P23458 1154 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 RPL38P63173 70 aaKnown RBP20.85■□□□□ 0.93
SHMT1-203ENST00000354098 TNFRSF17Q02223 184 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 NOXRED1Q6NXP6 359 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 MED25Q71SY5 747 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 MAVSQ7Z434 540 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 ADAMTS17Q8TE56 1095 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 MEAF6Q9HAF1 191 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 PHF11Q9UIL8 331 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 DLGAP4Q9Y2H0 992 aa20.85■□□□□ 0.93
SHMT1-203ENST00000354098 TPRP12270 2363 aaKnown RBP20.85■□□□□ 0.93
SHMT1-203ENST00000354098 SCN2AQ99250 2005 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 GLOD5A6NK44 160 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 ZNF195O14628 629 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 ANXA4P09525 319 aaPredicted RBP20.84■□□□□ 0.93
SHMT1-203ENST00000354098 MAOAP21397 527 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 UGT8Q16880 541 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 C6orf136Q5SQH8 315 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 PPP1R32Q7Z5V6 425 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 MMP21Q8N119 569 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 ADAMTS18Q8TE60 1221 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 TSLPQ969D9 159 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 PPP3R2Q96LZ3 170 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 AKTIPQ9H8T0 292 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 PFDN4Q9NQP4 134 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 SEMA3GQ9NS98 782 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 RIC8BQ9NVN3 520 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 MS4A12Q9NXJ0 267 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 SPACA6W5XKT8 324 aa20.84■□□□□ 0.93
SHMT1-203ENST00000354098 CDC14CA4D256 554 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 ZNF891A8MT65 544 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-203ENST00000354098 PRMT3O60678 531 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 AIFM1O95831 613 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 MMP11P24347 488 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 GYS2P54840 703 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 ATP6AP1LQ52LC2 224 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 CLNKQ7Z7G1 428 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 ZNF595Q8IYB9 648 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 METTL2AQ96IZ6 378 aaKnown RBP20.83■□□□□ 0.93
SHMT1-203ENST00000354098 PTCHD1Q96NR3 888 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 WDR55Q9H6Y2 383 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-203ENST00000354098 RPF2Q9H7B2 306 aaKnown RBP20.83■□□□□ 0.93
SHMT1-203ENST00000354098 NECTIN3Q9NQS3 549 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 PRTFDC1Q9NRG1 225 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 VTI1BQ9UEU0 232 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 HS3ST3B1Q9Y662 390 aa20.83■□□□□ 0.93
SHMT1-203ENST00000354098 SLCO1B7G3V0H7 640 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 TGFBR3LH3BV60 316 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 SDHDO14521 159 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 ZZEF1O43149 2961 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 ALOX12BO75342 701 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 TACR1P25103 407 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 BUD31P41223 144 aaPredicted RBP20.83■□□□□ 0.92
SHMT1-203ENST00000354098 TAS2R50P59544 299 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 NDUFAF5Q5TEU4 345 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 LANCL3Q6ZV70 420 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 PLPP5Q8NEB5 264 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 C16orf78Q8WTQ4 265 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 C8orf44Q96CB5 159 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 FCRL1Q96LA6 429 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 C1orf50Q9BV19 199 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 MRPS33Q9Y291 106 aaKnown RBP20.83■□□□□ 0.92
SHMT1-203ENST00000354098 CLDN16Q9Y5I7 305 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 USH1CQ9Y6N9 552 aa20.83■□□□□ 0.92
SHMT1-203ENST00000354098 NUP210LQ5VU65 1888 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 PCSK5Q92824 1860 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 GOLGA8QA0A0J9YX86 632 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 MYOCOSA0A1B0GUC4 107 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 GOLGA8OA6NCC3 632 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 GOLGA8NF8WBI6 632 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 K7ENP7 123 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 CLDN4O14493 209 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 PGRMC2O15173 223 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 EDF1O60869 148 aaKnown RBP20.82■□□□□ 0.92
SHMT1-203ENST00000354098 LDB3O75112 727 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 MYO1DO94832 1006 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 PRR35P0CG20 571 aa20.82■□□□□ 0.92
SHMT1-203ENST00000354098 NR2F6P10588 404 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms