RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TGFBR3LH3BV60 316 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 NRDCO43847 1150 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 PPP2R1BP30154 601 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 HNRNPH1P31943 449 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 MAGEA5P43359 124 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 KIR2DL3P43628 341 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 FNTAP49354 379 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 MTTPP55157 894 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 DLX5P56178 289 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 STX4Q12846 297 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ADPRMQ3LIE5 342 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 TEDDM1Q5T9Z0 273 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 SLCO4C1Q6ZQN7 724 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 CAMKMTQ7Z624 323 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ADAMTSL2Q86TH1 951 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 CTAGE6Q86UF2 777 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 FAM47BQ8NA70 645 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 GOT1L1Q8NHS2 421 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 NRGNQ92686 78 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 SCYL1Q96KG9 808 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 QRFPRQ96P65 431 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ALPK1Q96QP1 1244 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ROGDIQ9GZN7 287 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 REXO4Q9GZR2 422 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 CLEC4MQ9H2X3 399 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 COPS7AQ9UBW8 275 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 Q9UFV3 132 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 OARD1Q9Y530 152 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ARHGAP21Q5T5U3 1957 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 NSD1Q96L73 2696 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 A0A0G2JMM0 328 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 GOLGA6L10A0A0M3HER8 536 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 A0A1W2PPB8 328 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 A0A1W2PRS3 328 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 HSPB2A8KAH6 182 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 KIR3DP1A8MWS1 328 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 PGRMC1O00264 195 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 CYR61O00622 381 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 WDR47O94967 919 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 ZNF37AP17032 561 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 HOXB4P17483 251 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 HNRNPFP52597 415 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 PLA2G16P53816 162 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 LIM2P55344 173 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 RNF4P78317 190 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 FOXO1Q12778 655 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 ILF2Q12905 390 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 SLBPQ14493 270 aaKnown RBP eCLIP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 PPP1R7Q15435 360 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 HSPB2Q16082 182 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 MPEG1Q2M385 716 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 ZNF750Q32MQ0 723 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 RTL6Q6ICC9 239 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 C16orf47Q6ZP98 133 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 FRA10AC1Q70Z53 315 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 WDR53Q7Z5U6 358 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 CLNKQ7Z7G1 428 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 ZZZ3Q8IYH5 903 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 TMEM52Q8NDY8 209 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 SRFBP1Q8NEF9 429 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 PTPMT1Q8WUK0 201 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 ALOXE3Q9BYJ1 711 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 OR8D2Q9GZM6 311 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 EHD1Q9H4M9 534 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 EXO5Q9H790 373 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 LIN28AQ9H9Z2 209 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 LYRM4Q9HD34 91 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 RASSF1Q9NS23 344 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 GPRC5BQ9NZH0 403 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 DAPP1Q9UN19 280 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 JRKLQ9Y4A0 524 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 LIPGQ9Y5X9 500 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 SPACA6W5XKT8 324 aa13.67□□□□□ -0.22
CCDC88B-201ENST00000301897 TRGV5A0A0B4J1U4 118 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 A0A0G2JN53 185 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 ATP6AP2A0A1C7CYW4 349 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 G3V3Y1 287 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 SYT5O00445 386 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 DYRK3O43781 588 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 ATP6AP2O75787 350 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 COX7A2P14406 83 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 TNNI3P19429 210 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 KCNC1P48547 511 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 NR0B1P51843 470 aaKnown RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 BIKQ13323 160 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 CEBPEQ15744 281 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 ABHD17CQ6PCB6 329 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 DND1Q8IYX4 353 aaKnown RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 FBXW8Q8N3Y1 598 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC15A4Q8N697 577 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC2A12Q8TD20 617 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 FAM222BQ8WU58 562 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 MBD6Q96DN6 1003 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 VPS39Q96JC1 886 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 KCNC2Q96PR1 638 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 GPATCH1Q9BRR8 931 aaKnown RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 CNOT10Q9H9A5 744 aaKnown RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 ZNF358Q9NW07 568 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 QPCTLQ9NXS2 382 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 CTNNAL1Q9UBT7 734 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms