RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ADAP00813 363 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 C8GP07360 202 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CBR1P16152 277 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 EPHX2P34913 555 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ADAM15Q13444 863 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 MAD2L1BPQ15013 274 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 TRAM1Q15629 374 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CPZQ66K79 652 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ARHGAP11AQ6P4F7 1023 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PAMR1Q6UXH9 720 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZNF730Q6ZMV8 503 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 USP45Q70EL2 814 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FUNDC1Q8IVP5 155 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CPNE9Q8IYJ1 553 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 NAT16Q8N8M0 369 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 HPSE2Q8WWQ2 592 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 BSCL2Q96G97 398 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 FBXL20Q96IG2 436 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TEPSINQ96N21 525 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CNTNAP3BQ96NU0 1288 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 KCNN2Q9H2S1 579 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TPT1P8Q9HAU6 139 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 B3GNT2Q9NY97 397 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FOCADQ5VW36 1801 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 A0A1B0GVI7 797 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 LOC285095A0A1B0GVY8 99 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FAM86C2PA6NEL3 165 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ATP6V1G2-DDX39BF2Z307 99 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CYP17A1P05093 508 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GTF2F2P13984 249 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 POU2F1P14859 743 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CPT1AP50416 773 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RPS14P62263 151 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 PPP2CAP67775 309 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 HTD2P86397 168 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PPIGQ13427 754 aaKnown RBP eCLIP6.17□□□□□ -1.424e-7■□□□□ 10.9
VPS35-201ENST00000299138 ASAH1Q13510 395 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CCBE1Q6UXH8 406 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 UNC5DQ6UXZ4 953 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PDZD9Q8IXQ8 264 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CBARPQ8N350 705 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 RFKQ969G6 155 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 KCTD12Q96CX2 325 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 YIPF6Q96EC8 236 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 LINGO1Q96FE5 620 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CMTM7Q96FZ5 175 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TTLL2Q9BWV7 592 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GABARAPL3Q9BY60 117 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SH2B3Q9UQQ2 575 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PIN4Q9Y237 131 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 PCDHGB6Q9Y5F9 930 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TEX13DA0A0J9YY54 714 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 MGST1P10620 155 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 LILRA4P59901 499 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 C1QTNF8P60827 252 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 E2F1Q01094 437 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TIGD6Q17RP2 521 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SLC46A3Q7Z3Q1 461 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZNF619Q8N2I2 560 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 OR10H4Q8NGA5 316 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 OVCA2Q8WZ82 227 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RHBDF1Q96CC6 855 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 NTMT1Q9BV86 223 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CDCA4Q9BXL8 241 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ARL6Q9H0F7 186 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CRYL1Q9Y2S2 319 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 MYH14Q7Z406 1995 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 SLC35F4A4IF30 521 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 F5H5T6 163 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 STK16O75716 305 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 IGFBP1P08833 259 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 SBK3P0C264 359 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 LINC00032P0C843 101 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SAGP10523 405 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 GALP22466 123 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CSTF2P33240 577 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS35-201ENST00000299138 TGM4P49221 684 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 IFI44LQ53G44 452 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 AFMIDQ63HM1 303 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CHST9Q7L1S5 443 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ASPGQ86U10 573 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RAVER1Q8IY67 606 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 C7orf61Q8IZ16 206 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 OR56B2PQ8NGI1 322 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TIMM29Q9BSF4 260 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SLC5A7Q9GZV3 580 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 NXF2Q9GZY0 626 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 COMMD4Q9H0A8 199 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 MINDY3Q9H8M7 445 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ENY2Q9NPA8 101 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 MROH6A6NGR9 719 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ADM5C9JUS6 153 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SCO2O43819 266 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ZNF821O75541 412 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 C21orf58P58505 322 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NCS1P62166 190 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MFSD10Q14728 455 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms