RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SOCS2O14508 198 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 CASQ2O14958 399 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 PDPK1O15530 556 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 GPX2P18283 190 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 NUDT1P36639 197 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 AFF3P51826 1226 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 TP53BP2Q13625 1128 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 GK3PQ14409 553 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 ADPRMQ3LIE5 342 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 USP53Q70EK8 1073 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 OOSP2Q86WS3 158 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 GKN2Q86XP6 184 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 SLC25A45Q8N413 288 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 Q8N9G6 341 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 UTP15Q8TED0 518 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 NCSTNQ92542 709 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 TGM7Q96PF1 710 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 ZFYVE21Q9BQ24 234 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 PITHD1Q9GZP4 211 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 OAZ3Q9UMX2 235 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 ATP6V1C1P21283 382 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 MVDP53602 400 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 HNRNPKP61978 463 aaKnown RBP eCLIP15.63■□□□□ 0.09
USP4-201ENST00000265560 CSTF1Q05048 431 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 SPIDRQ14159 915 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 FXNQ16595 210 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 C6orf52Q5T4I8 152 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 TMEM214Q6NUQ4 689 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 ERMP1Q7Z2K6 904 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 HMGN2P46Q86SG4 172 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 ZC3H7AQ8IWR0 971 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 REXO5Q96IC2 774 aaKnown RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 TPD52L3Q96J77 140 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 QRFPRQ96P65 431 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 PILRAQ9UKJ1 303 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 FAF1Q9UNN5 650 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 ADAMTS9Q9P2N4 1935 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 B4GALT2O60909 372 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 UBTFL6P0CB48 400 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 TNFRSF1BP20333 461 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 FASP25445 335 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 SIM1P81133 766 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 RGS1Q08116 209 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 VMACQ2NL98 169 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 HS3ST5Q8IZT8 346 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 BAHD1Q8TBE0 780 aaPredicted RBP15.63■□□□□ 0.09
USP4-201ENST00000265560 CSF3RQ99062 836 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 ARMC1Q9NVT9 282 aa15.63■□□□□ 0.09
USP4-201ENST00000265560 RNF103-CHMP3A0A140T963 221 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 FAM220BPB1ANY3 271 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 SPDYE7PQ495Y7 208 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 TMEM35AQ53FP2 167 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 OTUD3Q5T2D3 398 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 ANKRD34AQ69YU3 496 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 MSANTD1Q6ZTZ1 278 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 CBR4Q8N4T8 237 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 METTL27Q8N6F8 245 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 CNRIP1Q96F85 164 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 RBCK1Q9BYM8 510 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 A0A0J9YY10 115 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 C7orf72A4D263 438 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 OR2W5A6NFC9 320 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 PIAS2O75928 621 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 SERPINB1P30740 379 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 GPC1P35052 558 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 STXBP1P61764 594 aaKnown RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 LAPTM4AQ15012 233 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 ZBTB49Q6ZSB9 765 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 IKBIPQ70UQ0 350 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 WDR53Q7Z5U6 358 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 LSRQ86X29 649 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 DCP2Q8IU60 420 aaKnown RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 EPHX4Q8IUS5 362 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 N4BP2L2Q92802 583 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 RERGQ96A58 199 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 CCDC3Q9BQI4 270 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 AGPAT4Q9NRZ5 378 aa15.62■□□□□ 0.09
USP4-201ENST00000265560 ZNF282Q9UDV7 671 aaPredicted RBP15.62■□□□□ 0.09
USP4-201ENST00000265560 FAM227AF5H4B4 570 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 GPIP06744 558 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 NELFEP18615 380 aaKnown RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 NCBP2P52298 156 aaKnown RBP eCLIP15.61■□□□□ 0.09
USP4-201ENST00000265560 OR1D5P58170 312 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 CHRNB3Q05901 458 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 RUNX2Q13950 521 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 KCNAB1Q14722 419 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SLC36A4Q6YBV0 504 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SIMC1Q8NDZ2 872 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 DNAJB8Q8NHS0 232 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 DNASE2BQ8WZ79 361 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 PIGKQ92643 395 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SLC47A1Q96FL8 570 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 BBS4Q96RK4 519 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 GLIPR2Q9H4G4 154 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 GORASP2Q9H8Y8 452 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 EME2A4GXA9 379 aaPredicted RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 LMO7DNF2Z398 122 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 ZNF26P17031 533 aaPredicted RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 PRIM2P49643 509 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SEPHS1P49903 392 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms