RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SMPD3Q9NY59 655 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 MUTYHQ9UIF7 546 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CFL2Q9Y281 166 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 WDR37Q9Y2I8 494 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 A8MUA0 341 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 RNASET2O00584 256 aaKnown RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CER1O95813 267 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ACADLP28330 430 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 KDELR2P33947 212 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 YAP1P46937 504 aaKnown RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CDH12P55289 794 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 SHC2P98077 582 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CCDC81Q6ZN84 652 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 RETREG3Q86VR2 466 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 FAM47BQ8NA70 645 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 GOLM1Q8NBJ4 401 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CADM4Q8NFZ8 388 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 GTF2H4Q92759 462 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PKP2Q99959 881 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 EPB41L1Q9H4G0 881 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 COQ10BQ9H8M1 238 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 TM9SF3Q9HD45 589 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 C5AR2Q9P296 337 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM181Q9P2C4 612 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ACSL6Q9UKU0 697 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 THRBP10828 461 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CKMT2P17540 419 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CD247P20963 164 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 SLC16A1P53985 500 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CCNIQ14094 377 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM164Q5U3C3 297 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 WASH2PQ6VEQ5 465 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ENDOVQ8N8Q3 282 aaKnown RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 KCT2Q8NC54 265 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 SLC45A3Q96JT2 553 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM27Q9HBJ8 222 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 WASH6PQ9NQA3 447 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ASIC5Q9NY37 505 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 TPRKBQ9Y3C4 175 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 A0A1B0GTL3 188 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 H0YGG7 62 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 FBP2O00757 339 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 HAT1O14929 419 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 PORP16435 677 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 IGFBP5P24593 272 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CHN2P52757 468 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CDC42P60953 191 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ARF3P61204 181 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 OLR1P78380 273 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 EIPR1Q53HC9 387 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 TTLL10Q6ZVT0 673 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 FUNDC1Q8IVP5 155 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 OR52N2Q8NGI0 321 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 PATE1Q8WXA2 126 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ART5Q96L15 291 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 PTCHD1Q96NR3 888 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 HCN3Q9P1Z3 774 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NCDNQ9UBB6 729 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 AK5Q9Y6K8 562 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CABIN1Q9Y6J0 2220 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NR1D2Q14995 579 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 GAB4Q2WGN9 574 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CYBRD1Q53TN4 286 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 DCST1Q5T197 706 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 LCN8Q6JVE9 175 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ARL14Q8N4G2 192 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 OR52J3Q8NH60 311 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 OR5K1Q8NHB7 308 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 SLC38A4Q969I6 547 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 UTP4Q969X6 686 aaKnown RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 BMFQ96LC9 184 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 PELOQ9BRX2 385 aaKnown RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CHRDQ9H2X0 955 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NDUFA13Q9P0J0 144 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ICKQ9UPZ9 632 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 IGHV1OR15-9A0A0B4J2B8 117 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 SRPX2O60687 465 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 FAM20BO75063 409 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CALRP27797 417 aaKnown RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NOS3P29474 1203 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ACY1Q03154 408 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CCINQ13939 588 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF267Q14586 743 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NR0B2Q15466 257 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 DEPDC4Q8N2C3 294 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NUP43Q8NFH3 380 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 GIPC3Q8TF64 312 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 HSH2DQ96JZ2 352 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 NR1H4Q96RI1 486 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 Q9N2J8 555 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 CCM2LQ9NUG4 571 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-201ENST00000254950 MAT2BQ9NZL9 334 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 RARRES3Q9UL19 164 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 RAB26Q9ULW5 256 aa11.03□□□□□ -0.64
VPS4A-201ENST00000254950 GREB1Q4ZG55 1949 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 ANTXRLA6NF34 631 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 CDC123O75794 336 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-201ENST00000254950 ZBTB11O95625 1053 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-201ENST00000254950 BMP1P13497 986 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 ITPKBP27987 946 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms