RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZSWIM3Q96MP5 696 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 NOTCH4Q99466 2003 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 KLK4Q9Y5K2 254 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 EFCAB10A6NFE3 127 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 SPINT1O43278 529 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 NFE2L1Q14494 772 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 IRF3Q14653 427 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 DUSP7Q16829 419 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF181Q2M3W8 571 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 INAVAQ3KP66 663 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 LCTLQ6UWM7 567 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 SLC9B2Q86UD5 537 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 PDXPQ96GD0 296 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 PPP1R16AQ96I34 528 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 ZDHHC5Q9C0B5 715 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 NXF2Q9GZY0 626 aaKnown RBP15.66■□□□□ 0.1
HOXD3-201ENST00000249440 SP140LQ9H930 580 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 CNOT2Q9NZN8 540 aaKnown RBP15.66■□□□□ 0.1
HOXD3-201ENST00000249440 ASF1AQ9Y294 204 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 UGT2A1Q9Y4X1 527 aa15.66■□□□□ 0.1
HOXD3-201ENST00000249440 PLXND1Q9Y4D7 1925 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 C5orf58C9J3I9 102 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 LZTS3O60299 673 aaPredicted RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 GASTP01350 101 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 RB1P06400 928 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 HSMCR30P0CW71 290 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ITGB7P26010 798 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 EIF2B2P49770 351 aaKnown RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CRISP1P54107 249 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CYP4F2P78329 520 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 COLEC12Q5KU26 742 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 PLPP4Q5VZY2 271 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 FRMPD2BQ6IN97 320 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 KLHL17Q6TDP4 642 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 PTCHD4Q6ZW05 846 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 RTL10Q7L3V2 364 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF367Q7RTV3 350 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 SLC44A2Q8IWA5 706 aaPredicted RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 NATD1Q8N6N6 113 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 MRPL43Q8N983 215 aaKnown RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CDCA4Q9BXL8 241 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 OR51E2Q9H255 320 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CXorf36Q9H7Y0 433 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 NMNAT1Q9HAN9 279 aaPredicted RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CPNE5Q9HCH3 593 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ABCB10Q9NRK6 738 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CLN6Q9NWW5 311 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CCDC59Q9P031 241 aaKnown RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF229Q9UJW7 825 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 IFT52Q9Y366 437 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ZAR1LA6NP61 321 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 DSCR3O14972 297 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 PAPLNO95428 1278 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 C6P13671 934 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CHMP24386 653 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 GRK5P34947 590 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 METAP1P53582 386 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF45Q02386 682 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 DPTQ07507 201 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 TPRG1LQ5T0D9 272 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 VN1R5Q7Z5H4 357 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 FAM129CQ86XR2 697 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 LYSMD2Q8IV50 215 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 CDADC1Q9BWV3 514 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 SORBS1Q9BX66 1292 aaKnown RBP15.65■□□□□ 0.1
HOXD3-201ENST00000249440 PRDM8Q9NQV8 689 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 POLE4Q9NR33 117 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 RHCGQ9UBD6 479 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 KCND3Q9UK17 655 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 PCDHGA3Q9Y5H0 932 aa15.65■□□□□ 0.1
HOXD3-201ENST00000249440 TMEM221A6NGB7 291 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 ANKDD1BA6NHY2 528 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 VEGFDO43915 354 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 TIMP1P01033 207 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 ADH5P11766 374 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 DDCP20711 480 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 KELP23276 732 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 NTHL1P78549 312 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 CDC20Q12834 499 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 FAM92BQ6ZTR7 304 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 MMP21Q8N119 569 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 NEURL3Q96EH8 262 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 IL17FQ96PD4 163 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 CHCHD6Q9BRQ6 235 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 FTSJ1Q9UET6 329 aa15.64■□□□□ 0.09
HOXD3-201ENST00000249440 WBP11Q9Y2W2 641 aaKnown RBP15.64■□□□□ 0.09
HOXD3-201ENST00000249440 CFAP20Q9Y6A4 193 aaKnown RBP15.64■□□□□ 0.09
HOXD3-201ENST00000249440 M0R129 80 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 KDM1AO60341 852 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 SERPINB1P30740 379 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 LIMK1P53667 647 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 MAPK12P53778 367 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 MANFP55145 182 aaKnown RBP15.63■□□□□ 0.09
HOXD3-201ENST00000249440 FOXD4Q12950 439 aaPredicted RBP15.63■□□□□ 0.09
HOXD3-201ENST00000249440 PUM1Q14671 1186 aaKnown RBP eCLIP15.63■□□□□ 0.09
HOXD3-201ENST00000249440 MED22Q15528 200 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 TIMM50Q3ZCQ8 353 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 TOR1AIP1Q5JTV8 583 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 FAM180BQ6P0A1 224 aa15.63■□□□□ 0.09
HOXD3-201ENST00000249440 FAM46DQ8NEK8 389 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms