RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SPATA7Q9P0W8 599 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 THAP10Q9P2Z0 257 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RABL2AQ9UBK7 228 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RABL2BQ9UNT1 228 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FAM149AA5PLN7 773 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RLN1P04808 185 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GGT2P36268 569 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 EEF1A1P68104 462 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FMO1Q01740 532 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ILKQ13418 452 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DEFB110Q30KQ9 67 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 EEF1A1P5Q5VTE0 462 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C1orf94Q6P1W5 598 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TTC33Q6PID6 262 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IL20RBQ6UXL0 311 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NANOGNBQ7Z5D8 188 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SIAH1Q8IUQ4 282 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C10orf107Q8IVU9 208 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF671Q8TAW3 534 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 KBTBD7Q8WVZ9 684 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 THRSPQ92748 146 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NINJ1Q92982 152 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FAM210AQ96ND0 272 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MTERF1Q99551 399 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CST11Q9H112 138 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 HIPK2Q9H2X6 1198 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TNRC6CQ9HCJ0 1690 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 A0A0J9YYE9 177 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ESYT3A0FGR9 886 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SAGE2PA6NJ88 616 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ALOX12P18054 663 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FDXRP22570 491 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RPS14P62263 151 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CSNK2A1P68400 391 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SLC14A1Q13336 389 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TOP3AQ13472 1001 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DNASE1L3Q13609 305 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF227Q86WZ6 799 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NRROSQ86YC3 692 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OR5L1Q8NGL2 311 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 EEF1AKMT1Q8WVE0 214 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF689Q96CS4 500 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TIMM29Q9BSF4 260 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PIGVQ9NUD9 493 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SAMD4AQ9UPU9 718 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ARL5AQ9Y689 179 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PTPRQQ9UMZ3 2332 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PCNX2A6NKB5 2137 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 B8ZZF3 427 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 J3KR12 359 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 HSPA12AO43301 675 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PCDH7O60245 1069 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PEX11AO75192 247 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CD79AP11912 226 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CEACAM1P13688 526 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GPR3P46089 330 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FAM189BP81408 668 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CHAF1BQ13112 559 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DGUOKQ16854 277 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SUSD1Q6UWL2 747 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZER1Q7Z7L7 766 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 LHFPL3Q86UP9 236 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C1orf216Q8TAB5 229 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 THAP4Q8WY91 577 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FGF14Q92915 247 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ADAD1Q96M93 576 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 KLF16Q9BXK1 252 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C1GALT1Q9NS00 363 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CENPMQ9NSP4 180 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CUTCQ9NTM9 273 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NLGN3Q9NZ94 848 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PCDHGB1Q9Y5G3 927 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FKBP7Q9Y680 259 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TEX13CA0A0J9YWL9 993 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1W2PPC4 97 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OR14I1A6ND48 311 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MEIS3P2A8K0S8 358 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SLC16A5O15375 505 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 LYPLA1O75608 230 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PDE5AO76074 875 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 HSMCR30P0CW71 290 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NPR2P20594 1047 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 AK4P27144 223 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ECHS1P30084 290 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ASPAP45381 313 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SLC1A6P48664 564 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ACADVLP49748 655 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ARFIP1P53367 373 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PKNOX1P55347 436 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CDK3Q00526 305 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GBE1Q04446 702 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IL17AQ16552 155 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ALG1LQ6GMV1 187 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 AGTRAPQ6RW13 159 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IQCHQ86VS3 1027 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PIAS4Q8N2W9 510 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM102Q8N9M5 508 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OR1J4Q8NGS1 313 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OR1J2Q8NGS2 313 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PLEKHO2Q8TD55 490 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms