RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SLAMF7Q9NQ25 335 aa16■□□□□ 0.15
CLN3-252ENST00000636907 FSCN3Q9NQT6 498 aa16■□□□□ 0.15
CLN3-252ENST00000636907 LRIT1Q9P2V4 623 aa16■□□□□ 0.15
CLN3-252ENST00000636907 FBXO4Q9UKT5 387 aa16■□□□□ 0.15
CLN3-252ENST00000636907 ATG4BQ9Y4P1 393 aa16■□□□□ 0.15
CLN3-252ENST00000636907 A0A1W2PR48 441 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 TCRBV5S2A0A599 114 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 ELOVL7A1L3X0 281 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 PDPK1O15530 556 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 HCRTR1O43613 425 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 GPX2P18283 190 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 SLC7A1P30825 629 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 PPM1FP49593 454 aaPredicted RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 FAM92BQ6ZTR7 304 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 MICU2Q8IYU8 434 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 PQLC1Q8N2U9 271 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 CANT1Q8WVQ1 401 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 NSMCE2Q96MF7 247 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 TRIM4Q9C037 500 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 TAS2R9Q9NYW1 312 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 MRPS2Q9Y399 296 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 AP4S1Q9Y587 144 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 GMEB1Q9Y692 573 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 DHRS12A0PJE2 317 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 URADA6NGE7 173 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 GSTA4O15217 222 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 KIF1CO43896 1103 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 GUCY1B2O75343 617 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 AIFM1O95831 613 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 DDX5P17844 614 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 EPHA8P29322 1005 aaPredicted RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 ALDH4A1P30038 563 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 VHLP40337 213 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 EPHA4P54764 986 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 GFERP55789 205 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 PCBP4P57723 403 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 VSX2P58304 361 aaPredicted RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 SUZ12Q15022 739 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 DEFB110Q30KQ9 67 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 NKAIN2Q5VXU1 208 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 CEP68Q76N32 757 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 SERPINA11Q86U17 422 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 NATD1Q8N6N6 113 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 FAM110BQ8TC76 370 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 FIG4Q92562 907 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 REXO5Q96IC2 774 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 ZC3H10Q96K80 434 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 MAPKAP1Q9BPZ7 522 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 C1GALT1Q9NS00 363 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 LYARQ9NX58 379 aaKnown RBP15.99■□□□□ 0.15
CLN3-252ENST00000636907 TAS2R7Q9NYW3 318 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 EHD3Q9NZN3 535 aa15.99■□□□□ 0.15
CLN3-252ENST00000636907 NUP214P35658 2090 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 MUC3AQ02505 3323 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 GLOD5A6NK44 160 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 WASHC1A8K0Z3 465 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 ZSCAN9O15535 394 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 C9P02748 559 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 MYF5P13349 255 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 PPIBP23284 216 aaKnown RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 FRKP42685 505 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 POLE2P56282 527 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 OR1D5P58170 312 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 COL9A2Q14055 689 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 DEFB134Q4QY38 66 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 PEAR1Q5VY43 1037 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 ABHD13Q7L211 337 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 ADGRG5Q8IZF4 528 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 LILRA2Q8N149 483 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 ZNF655Q8N720 491 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 CSNK1A1LQ8N752 337 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 GOLM1Q8NBJ4 401 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 OR5P2Q8WZ92 322 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 TGM7Q96PF1 710 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 PKP2Q99959 881 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 CCDC3Q9BQI4 270 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 SLC35A5Q9BS91 424 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 ROGDIQ9GZN7 287 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 CCM2LQ9NUG4 571 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 C6orf203Q9P0P8 240 aaPredicted RBP15.98■□□□□ 0.15
CLN3-252ENST00000636907 RIMS3Q9UJD0 308 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 UTS2RQ9UKP6 389 aa15.98■□□□□ 0.15
CLN3-252ENST00000636907 A0A1B0GTQ1 180 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 CXCR6O00574 342 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 PROM1O43490 865 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 NUDT21O43809 227 aaKnown RBP15.97■□□□□ 0.15
CLN3-252ENST00000636907 GMNNO75496 209 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 NTRK1P04629 796 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 CTSBP07858 339 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 ALOX12P18054 663 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 IL1RNP18510 177 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 MANFP55145 182 aaKnown RBP15.97■□□□□ 0.15
CLN3-252ENST00000636907 CYP51A1Q16850 503 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 MANEAQ5SRI9 462 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 C18orf63Q68DL7 685 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 TMEM214Q6NUQ4 689 aaKnown RBP15.97■□□□□ 0.15
CLN3-252ENST00000636907 ZCCHC8Q6NZY4 707 aaKnown RBP15.97■□□□□ 0.15
CLN3-252ENST00000636907 KANSL1Q7Z3B3 1105 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 GATAD2AQ86YP4 633 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 DNAJC22Q8N4W6 341 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms