RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 C2orf92A0A1B0GVN3 265 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 TAPBPO15533 448 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SSTR2P30874 369 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 GRK5P34947 590 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MC1RQ01726 317 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SLBPQ14493 270 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLN3-244ENST00000636147 TCEA2Q15560 299 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 PXDC1Q5TGL8 231 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 OR2G6Q5TZ20 316 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 GDF6Q6KF10 455 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 AGTRAPQ6RW13 159 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 ARL9Q6T311 187 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 B3GLCTQ6Y288 498 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 GLCCI1Q86VQ1 547 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 DNAJC5GQ8N7S2 189 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 ZNF557Q8N988 423 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 LMNTD1Q8N9Z9 388 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SETD6Q8TBK2 473 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 FUBP3Q96I24 572 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLN3-244ENST00000636147 PTPN18Q99952 460 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MGME1Q9BQP7 344 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 HTATIP2Q9BUP3 242 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 PPT2Q9UMR5 302 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 ZFR2Q9UPR6 939 aaKnown RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 MYO7AQ13402 2215 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 FER1L6Q2WGJ9 1857 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 EEF1E1O43324 174 aaKnown RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 OR5F1O95221 314 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 PRAMEF12O95522 483 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 FCER2P06734 321 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 PRR35P0CG20 571 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 HLA-EP13747 358 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 HNF1BP35680 557 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 HMGCLP35914 325 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 BDKRB1P46663 353 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 SUOXP51687 545 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 STX4Q12846 297 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 FAPQ12884 760 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 ADGRF1Q5T601 910 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 FAAH2Q6GMR7 532 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 MEIOBQ8N635 442 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 BTN2A2Q8WVV5 523 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 C12orf66Q96MD2 445 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 OSGEPL1Q9H4B0 414 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 ZDHHC3Q9NYG2 299 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 PCDHGB2Q9Y5G2 931 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 DSCR3O14972 297 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 NRIP1P48552 1158 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 CLCN7P51798 805 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 AP1S1P61966 158 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 LARS2Q15031 903 aaKnown RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 TRIM71Q2Q1W2 868 aaKnown RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 KLHL22Q53GT1 634 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 RPS26P11Q5JNZ5 115 aaPredicted RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 FAM205BPQ63HN1 556 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 TMIGD1Q6UXZ0 262 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 CFAP206Q8IYR0 622 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 ZNF433Q8N7K0 673 aaPredicted RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 SAMD12Q8N8I0 201 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 RTP3Q9BQQ7 232 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 TMEM121BQ9BXQ6 578 aaPredicted RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 OR51V1Q9H2C8 321 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 GALNT9Q9HCQ5 603 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 IL20RAQ9UHF4 553 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 ALG5Q9Y673 324 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 A0A0U1RQF3 1178 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 A0A1W2PPK0 400 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 C2orf78A6NCI8 922 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 SLC38A8A6NNN8 435 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 ONECUT3O60422 494 aaPredicted RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 HPGDSO60760 199 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 KDM4BO94953 1096 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 SLC6A4P31645 630 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 IFNGR2P38484 337 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 GBX1Q14549 363 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 EIF4HQ15056 248 aaKnown RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 MANEALQ5VSG8 457 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 XKRXQ6PP77 449 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 PAQR6Q6TCH4 344 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 IQCHQ86VS3 1027 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 BEST4Q8NFU0 473 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 GON7Q9BXV9 100 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 TMEM138Q9NPI0 162 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 QPCTLQ9NXS2 382 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 FBXO9Q9UK97 447 aaPredicted RBP10.58□□□□□ -0.72
CLN3-244ENST00000636147 ASF1AQ9Y294 204 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 KLK4Q9Y5K2 254 aa10.58□□□□□ -0.72
CLN3-244ENST00000636147 SBF2Q86WG5 1849 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 COL24A1Q17RW2 1714 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 A0A1W2PRG6 482 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 GABRR3A8MPY1 467 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 A8MUA0 341 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 FZD9O00144 591 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 MID1O15344 667 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 MRPS14O60783 128 aaKnown RBP10.57□□□□□ -0.72
CLN3-244ENST00000636147 STATHP02808 62 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 ALPPL2P10696 532 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 BPIP17213 487 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 CHMP24386 653 aa10.57□□□□□ -0.72
CLN3-244ENST00000636147 STOMP27105 288 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms