RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZNF514Q96K75 400 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 CDADC1Q9BWV3 514 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 OR2AG1Q9H205 316 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 CCDC177Q9NQR7 707 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 IMPAD1Q9NX62 359 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 TAAR2Q9P1P5 351 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 DUSP12Q9UNI6 340 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 FAM32AQ9Y421 112 aaKnown RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 IRAK3Q9Y616 596 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PCM1Q15154 2024 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 TRBC2A0A5B9 178 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PI15O43692 258 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 MPZL2O60487 215 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 TBX19O60806 448 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 GADD45GO95257 159 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 RHOP08100 348 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PTPN2P17706 415 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 CDC42P60953 191 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PRKCDQ05655 676 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 ARMCX4Q5H9R4 360 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 IER5LQ5T953 404 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 RTL10Q7L3V2 364 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 SLC22A16Q86VW1 577 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 TRAPPC5Q8IUR0 188 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 LYSMD2Q8IV50 215 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 WFIKKN2Q8TEU8 576 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 TMEM121BQ9BXQ6 578 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 SLC6A16Q9GZN6 736 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 CPNE5Q9HCH3 593 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 MS4A12Q9NXJ0 267 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 SAGE1Q9NXZ1 904 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 DSPPQ9NZW4 1301 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 DOCK6Q96HP0 2047 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 TLL1O43897 1013 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 CNOT3O75175 753 aaKnown RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 DSTNP60981 165 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 CD300CQ08708 224 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 PTGES3Q15185 160 aaKnown RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 REEP3Q6NUK4 255 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 LCTLQ6UWM7 567 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 SLC9B2Q86UD5 537 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 FAM129CQ86XR2 697 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF547Q8IVP9 402 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 LMNTD1Q8N9Z9 388 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF740Q8NDX6 193 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 B3GNT7Q8NFL0 401 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 ZDHHC5Q9C0B5 715 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 A4GALTQ9NPC4 353 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 RAB23Q9ULC3 237 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 WBP11Q9Y2W2 641 aaKnown RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 IFT52Q9Y366 437 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 TRIM17Q9Y577 477 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 K7ESM1 405 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 IFNW1P05000 195 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 PIPP12273 146 aaPredicted RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 FUT4P22083 530 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 SLC15A1P46059 708 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 MEF2AQ02078 507 aaPredicted RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF45Q02386 682 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 DPTQ07507 201 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 TSTA3Q13630 321 aaPredicted RBP12.18□□□□□ -0.46
LINC00540-203ENST00000631321 CYP27C1Q4G0S4 372 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 SAXO2Q658L1 398 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 FRMPD2BQ6IN97 320 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 PNCKQ6P2M8 343 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 KLHL17Q6TDP4 642 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 TMIGD1Q6UXZ0 262 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 AQP11Q8NBQ7 271 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 NUS1Q96E22 293 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 NEURL3Q96EH8 262 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 NLNQ9BYT8 704 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 RNF208Q9H0X6 261 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 OR51E2Q9H255 320 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 CXorf36Q9H7Y0 433 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 SLC6A14Q9UN76 642 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 GPR34Q9UPC5 381 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 ATP11BQ9Y2G3 1177 aa12.18□□□□□ -0.46
LINC00540-203ENST00000631321 KPNA3O00505 521 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 POP7O75817 140 aaKnown RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 SEMA3DO95025 777 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 GASTP01350 101 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 PRNPP04156 253 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DBTP11182 482 aaKnown RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CCL5P13501 91 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CHMP24386 653 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 SOAT1P35610 550 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CRISP1P54107 249 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 PUM1Q14671 1186 aaKnown RBP eCLIP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 COLEC12Q5KU26 742 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 PRAMEF14Q5SWL7 426 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 PRAMEF13Q5VWM6 474 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 TRMT11Q7Z4G4 463 aaKnown RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DSG4Q86SJ6 1040 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 MMP21Q8N119 569 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 KRT78Q8N1N4 520 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 NATD1Q8N6N6 113 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF366Q8N895 744 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 OR2L2Q8NH16 312 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 OR5P2Q8WZ92 322 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 GTPBP3Q969Y2 492 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms