RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 SCARB2Q14108 478 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TRIM71Q2Q1W2 868 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 LEXMQ3ZCV2 418 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ACSM2BQ68CK6 577 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 C22orf42Q6IC83 251 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 HSDL2Q6YN16 418 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 GLRX5Q86SX6 157 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 DDX53Q86TM3 631 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 DENND1CQ8IV53 801 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 VPS37AQ8NEZ2 397 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 GEMIN6Q8WXD5 167 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 MYO19Q96H55 970 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 MTERF1Q99551 399 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 ARHGAP39Q9C0H5 1083 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 CRISPLD1Q9H336 500 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 SLC23A1Q9UHI7 598 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 CLCA3PQ9Y6N3 262 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 PRAMEF33A0A0G2JMD5 474 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 GLYATL1P3A0A0U1RQE8 302 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 FADS2P1A8MWK0 482 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 PROM1O43490 865 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 PRAMEF10O60809 474 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TNFRSF21O75509 655 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 BPIP17213 487 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 APEX1P27695 318 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 SLC11A2P49281 568 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TUFMP49411 452 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 GCNT6Q5T4J0 391 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ARMC12Q5T9G4 340 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ANXA8L1Q5VT79 327 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 WDR53Q7Z5U6 358 aaPredicted RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 ABI3BPQ7Z7G0 1075 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ZNF280BQ86YH2 543 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 GPR65Q8IYL9 337 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 PROKR2Q8NFJ6 384 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 SKA2Q8WVK7 121 aaPredicted RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 TMEM203Q969S6 136 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ZC3HAV1LQ96H79 300 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 SLC6A18Q96N87 628 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 ADAM2Q99965 735 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TRAF4Q9BUZ4 470 aaPredicted RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 SLC12A9Q9BXP2 914 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 RERGLQ9H628 205 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TRIM45Q9H8W5 580 aaPredicted RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 DNAJC11Q9NVH1 559 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 RBFOX1Q9NWB1 397 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 MCUBQ9NWR8 336 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 TMCC3Q9ULS5 477 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 FCF1Q9Y324 198 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 DSPPQ9NZW4 1301 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 CLDN7O95471 211 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 CHRM5P08912 532 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 HIST1H2AGP0C0S8 130 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 SLC2A2P11168 524 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 ACADMP11310 421 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 CD22P20273 847 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 HIST1H2ADP20671 130 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 IDSP22304 550 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 CCR7P32248 378 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 SDC2P34741 201 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 SLC9A3P48764 834 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 RHOAP61586 193 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ZNF91Q05481 1191 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ZNF628Q5EBL2 1059 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 TOR2AQ5JU69 321 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 LYPLAL1Q5VWZ2 237 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 TRIQKQ629K1 86 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ZNF770Q6IQ21 691 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 SDE2Q6IQ49 451 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 NXPE1Q8N323 547 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 C1orf52Q8N6N3 182 aaKnown RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 LSMEM1Q8N8F7 131 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 C19orf18Q8NEA5 215 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 UPRTQ96BW1 309 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ZBED6CLQ96FA7 236 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 HIST1H2AHQ96KK5 128 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 NELL2Q99435 816 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 SEPT5Q99719 369 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 HIST1H2AJQ99878 128 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 H2AFJQ9BTM1 129 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 RETREG1Q9H6L5 497 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ANKRA2Q9H9E1 313 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 B3GNT2Q9NY97 397 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ZNF282Q9UDV7 671 aaPredicted RBP13.49□□□□□ -0.25
LDB3-209ENST00000623056 NOD1Q9Y239 953 aa13.49□□□□□ -0.25
LDB3-209ENST00000623056 ARRDC5A6NEK1 342 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 MANSC4A6NHS7 340 aaPredicted RBP13.48□□□□□ -0.25
LDB3-209ENST00000623056 MYL12BO14950 172 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 TEX28O15482 410 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 HCN1O60741 890 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 SH3BGRLO75368 114 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 HLA-DQB1P01920 261 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 IGFBP1P08833 259 aaPredicted RBP13.48□□□□□ -0.25
LDB3-209ENST00000623056 FAM157BP0CG42 384 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 RAE1P78406 368 aaKnown RBP13.48□□□□□ -0.25
LDB3-209ENST00000623056 C1DQ13901 141 aaKnown RBP13.48□□□□□ -0.25
LDB3-209ENST00000623056 ELOAQ14241 798 aaKnown RBP13.48□□□□□ -0.25
LDB3-209ENST00000623056 WSCD2Q2TBF2 565 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 TMEM201Q5SNT2 666 aa13.48□□□□□ -0.25
LDB3-209ENST00000623056 GDF6Q6KF10 455 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms