RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 DUS3LQ96G46 650 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SCYL1Q96KG9 808 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HIST1H2AHQ96KK5 128 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 C10orf90Q96M02 699 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 FER1L6-AS2Q96M78 137 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HIST1H2AJQ99878 128 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 MRPL57Q9BQC6 102 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HAUS8Q9BT25 410 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 H2AFJQ9BTM1 129 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 NDC1Q9BTX1 674 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SARGQ9BW04 601 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 MRPL1Q9BYD6 325 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CD244Q9BZW8 370 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SLC7A5P2Q9GIP4 190 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SLC25A18Q9H1K4 315 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZBTB26Q9HCK0 441 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 TCF7L2Q9NQB0 619 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SLC22A11Q9NSA0 550 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 WWOXQ9NZC7 414 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZNF225Q9UK10 706 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 TMCO1Q9UM00 188 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SNX7Q9UNH6 387 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 FARSAQ9Y285 508 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 POLEQ07864 2286 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 USP9XQ93008 2570 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SCN2AQ99250 2005 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 LOC101059948A0A1B0GTJ6 334 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 B8ZZF3 427 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 H0Y3Z8 333 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 H3BNX3 289 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PDLIM1O00151 329 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 E2F3O00716 465 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 OR7A17O14581 309 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ZNF749O43361 778 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 VPS4BO75351 444 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 STK16O75716 305 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 OR2B3O76000 313 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 KRT36O76013 467 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 BAG2O95816 211 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 NPPAP01160 153 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 LYNP07948 512 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 RPS17P08708 135 aaKnown RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 LINGO3P0C6S8 592 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 LIFP15018 202 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TSPAN8P19075 237 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 NCF2P19878 526 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ME2P23368 584 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ARRB2P32121 409 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TTKP33981 857 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 RORAP35398 523 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 DLSTP36957 453 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 RPL5P46777 297 aaKnown RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ATP4BP51164 291 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 VSX2P58304 361 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 DCDP81605 110 aaKnown RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 NFKB2Q00653 900 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PCDH1Q08174 1060 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 CDC20Q12834 499 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 SF3A3Q12874 501 aaKnown RBP eCLIP4.98□□□□□ -1.613e-8■■■■■ 29.7
SHMT1-211ENST00000618902 HYAL2Q12891 473 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TRAF3Q13114 568 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 KLF10Q13118 480 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 DNASE1L3Q13609 305 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 DOC2AQ14183 400 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 E2F2Q14209 437 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 SLBPQ14493 270 aaKnown RBP eCLIP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PCLAFQ15004 111 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PCBP2Q15366 365 aaKnown RBP eCLIP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 MMEL1Q495T6 779 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 UNC50Q53HI1 259 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 SOWAHCQ53LP3 525 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ATG9BQ674R7 924 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 FAM199XQ6PEV8 388 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 C19orf48Q6RUI8 117 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 FAM198BQ6UWH4 519 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 FRA10AC1Q70Z53 315 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 COX15Q7KZN9 410 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PRSS41Q7RTY9 318 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 GOLGA7Q7Z5G4 137 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TMPRSS11BQ86T26 416 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 VASH2Q86V25 355 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 C17orf64Q86WR6 236 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 RAB43Q86YS6 212 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TREML1Q86YW5 311 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 C10orf107Q8IVU9 208 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TCAIMQ8N3R3 496 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 RNF175Q8N4F7 328 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 MARVELD2Q8N4S9 558 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 METTL27Q8N6F8 245 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 AMER2Q8N7J2 671 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TTLQ8NG68 377 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 OR52B6Q8NGF0 335 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 CREB3L4Q8TEY5 395 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ZNF483Q8TF39 744 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.98□□□□□ -1.61
SHMT1-211ENST00000618902 STARD8Q92502 1023 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TM9SF4Q92544 642 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 PPP1R14BQ96C90 147 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 CLIP3Q96DZ5 547 aa4.98□□□□□ -1.61
SHMT1-211ENST00000618902 TM4SF19Q96DZ7 209 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms