RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SLC12A4Q9UP95 1085 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ZFYVE26Q68DK2 2539 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 MED13Q9UHV7 2174 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ERVH48-1M5A8F1 160 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CYR61O00622 381 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 PCDH17O14917 1159 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 EEDO75530 441 aaKnown RBP15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CRCPO75575 148 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 C8orf89P0DMQ9 161 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 UROSP10746 265 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 SERPINB3P29508 390 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 SERPINB5P36952 375 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 WDR4P57081 412 aaKnown RBP15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 SLAMF1Q13291 335 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 TTMPQ5BVD1 217 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CES4AQ5XG92 561 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CPZQ66K79 652 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CLEC6AQ6EIG7 209 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ATG14Q6ZNE5 492 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 NUDT13Q86X67 352 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 METTL4Q8N3J2 472 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 GBP7Q8N8V2 638 aaPredicted RBP15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 TMEM102Q8N9M5 508 aaPredicted RBP15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 PLPP5Q8NEB5 264 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ADAMTS18Q8TE60 1221 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 CSF3RQ99062 836 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ACPTQ9BZG2 426 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ING2Q9H160 280 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 NMRK1Q9NWW6 199 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 VPS29Q9UBQ0 182 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 FBXL4Q9UKA2 621 aa15.58■□□□□ 0.08
CCDC28A-202ENST00000611852 ATMQ13315 3056 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 LOC102723996A0A087X1L8 192 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 A0A0A6YYD5 115 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 A0A1W2PQ72 361 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 SERTM1A2A2V5 107 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 AZIN1O14977 448 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 ACPPP15309 386 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 CHN1P15882 459 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 HNRNPFP52597 415 aaKnown RBP15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 RRADP55042 308 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 BTG2P78543 158 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 TBL3Q12788 808 aaKnown RBP15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 CHAF1BQ13112 559 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 CHI3L2Q15782 390 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 DCAF10Q5QP82 559 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 HHATQ5VTY9 493 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 PCSK4Q6UW60 755 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 SCIMPQ6UWF3 145 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 QSOX2Q6ZRP7 698 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 LANCL3Q6ZV70 420 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 FAM47BQ8NA70 645 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 TMEM52Q8NDY8 209 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 PPP1R14CQ8TAE6 165 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 METTL21AQ8WXB1 218 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 FER1L6-AS2Q96M78 137 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 PAIP2Q9BPZ3 127 aaKnown RBP15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 TRIM55Q9BYV6 548 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 EML4Q9HC35 981 aaKnown RBP15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 AHSPQ9NZD4 102 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 ADAM29Q9UKF5 820 aa15.57■□□□□ 0.08
CCDC28A-202ENST00000611852 MASP2O00187 686 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 TMPRSS11DO60235 418 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 PRMT3O60678 531 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 DNAJB5O75953 348 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 GBAP04062 536 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 SERPINE1P05121 402 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 FGF4P08620 206 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 COX6A1P12074 109 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 POLE2P56282 527 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 HMGCS1Q01581 520 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 NSDHLQ15738 373 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 KANK2Q63ZY3 851 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 MRM1Q6IN84 353 aaKnown RBP15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 COMMD6Q7Z4G1 85 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 GOLGA6L1Q8N7Z2 621 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 TSLPQ969D9 159 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 VPS50Q96JG6 964 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 PTCHD1Q96NR3 888 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 ARHGAP9Q9BRR9 750 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 PRDM9Q9NQV7 894 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 NKIRAS1Q9NYS0 192 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 FBXW2Q9UKT8 454 aa15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 MRPS33Q9Y291 106 aaKnown RBP15.56■□□□□ 0.08
CCDC28A-202ENST00000611852 IGKV3D-11A0A0A0MRZ8 115 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 IGHV1-45A0A0A0MS14 117 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 KLK1P06870 262 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 MAOAP21397 527 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 BGNP21810 368 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 TPP2P29144 1249 aaPredicted RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 HNRNPH2P55795 449 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 HSD17B7P56937 341 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 EEF1A2Q05639 463 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 CYP20A1Q6UW02 462 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 PAGE2Q7Z2X7 111 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 TRIM46Q7Z4K8 759 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 ANKRD37Q7Z713 158 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 GPR180Q86V85 440 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 ZNF595Q8IYB9 648 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 MGARPQ8TDB4 240 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms