RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 K7EM74 188 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 PLPP1O14494 284 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 C1QL1O75973 258 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 KRT6AP02538 564 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 KRT6BP04259 564 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 KRT6CP48668 564 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 NAGLUP54802 743 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 HSD17B7P56937 341 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 OR4D2P58180 307 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 BTG2P78543 158 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 SLAMF1Q13291 335 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 RAPSNQ13702 412 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 PCOLCEQ15113 449 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 CEP85LQ5SZL2 805 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 VWA5B1Q5TIE3 1220 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 LIPMQ5VYY2 423 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 LRIG3Q6UXM1 1119 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 RIPOR1Q6ZS17 1223 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 LANCL3Q6ZV70 420 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 ZCCHC7Q8N3Z6 543 aaKnown RBP14.13□□□□□ -0.15
UPF1-202ENST00000594243 TEX19Q8NA77 164 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 C7orf57Q8NEG2 295 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 METTL6Q8TCB7 284 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 SELENOMQ8WWX9 145 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 IMMP1LQ96LU5 166 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 MESP1Q9BRJ9 268 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 C12orf65Q9H3J6 166 aaKnown RBP14.13□□□□□ -0.15
UPF1-202ENST00000594243 GSTO2Q9H4Y5 243 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 ZNF552Q9H707 407 aaPredicted RBP14.13□□□□□ -0.15
UPF1-202ENST00000594243 BRF2Q9HAW0 419 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 PRTFDC1Q9NRG1 225 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 KCMF1Q9P0J7 381 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 ZNF225Q9UK10 706 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 HEMK1Q9Y5R4 338 aaPredicted RBP14.13□□□□□ -0.15
UPF1-202ENST00000594243 SEC16AO15027 2179 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 SCN3AQ9NY46 2000 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 CYR61O00622 381 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 DPM1O60762 260 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 TRIM13O60858 407 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 ULK1O75385 1050 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SPAG7O75391 227 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SEMA3DO95025 777 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 ESRRBO95718 433 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 PDYNP01213 254 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SERPINA7P05543 415 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 ENO1P06733 434 aaKnown RBP14.12□□□□□ -0.15
UPF1-202ENST00000594243 HMOX2P30519 316 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 ZNF33BQ06732 778 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 Q0VFX4 171 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 KLRB1Q12918 225 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SLC13A2Q13183 592 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SFT2D3Q587I9 215 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SGO1Q5FBB7 561 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 AGAP7PQ5VUJ5 663 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 JMJD6Q6NYC1 403 aaPredicted RBP14.12□□□□□ -0.15
UPF1-202ENST00000594243 ZNF793Q6ZN11 406 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 PTRH1Q86Y79 214 aaKnown RBP14.12□□□□□ -0.15
UPF1-202ENST00000594243 CDYL2Q8N8U2 506 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 FAM47BQ8NA70 645 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 TCP10LQ8TDR4 215 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SREK1Q8WXA9 508 aaKnown RBP14.12□□□□□ -0.15
UPF1-202ENST00000594243 TM9SF4Q92544 642 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 TSLPQ969D9 159 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 AGAP4Q96P64 663 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 FAM111AQ96PZ2 611 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 LPAR4Q99677 370 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 MAPKAP1Q9BPZ7 522 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 SLC29A3Q9BZD2 475 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 CENPHQ9H3R5 247 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 DDX31Q9H8H2 851 aaKnown RBP14.12□□□□□ -0.15
UPF1-202ENST00000594243 MID1IP1Q9NPA3 183 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 PHF11Q9UIL8 331 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 ATMQ13315 3056 aa14.12□□□□□ -0.15
UPF1-202ENST00000594243 IGHV3-20A0A0C4DH32 117 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 TCRBV16S1A1N1A0A5B0 115 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 CTIFO43310 598 aaKnown RBP14.11□□□□□ -0.15
UPF1-202ENST00000594243 CTNSO60931 367 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 SEC24DO94855 1032 aaPredicted RBP14.11□□□□□ -0.15
UPF1-202ENST00000594243 ETHE1O95571 254 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 PDGFAP04085 211 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 MYZAPP0CAP1 466 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 PRR35P0CG20 571 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 HSD3B1P14060 373 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 NR1D1P20393 614 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 MAOAP21397 527 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 CPN2P22792 545 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 HSD3B2P26439 372 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 TLX1P31314 330 aaPredicted RBP14.11□□□□□ -0.15
UPF1-202ENST00000594243 BSGP35613 385 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 PCLAFQ15004 111 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 EXT1Q16394 746 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 BTBD16Q32M84 506 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 BEND6Q5SZJ8 279 aaPredicted RBP14.11□□□□□ -0.15
UPF1-202ENST00000594243 PLAG1Q6DJT9 500 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 CYP20A1Q6UW02 462 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 FRMD7Q6ZUT3 714 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 PAGE2Q7Z2X7 111 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 GPR180Q86V85 440 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 NUDT13Q86X67 352 aa14.11□□□□□ -0.15
UPF1-202ENST00000594243 C10orf107Q8IVU9 208 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms