RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 STAG3L4Q8TBR4 150 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 WDR34Q96EX3 536 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 SEC16BQ96JE7 1060 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 CSF3RQ99062 836 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 LRRC1Q9BTT6 524 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 DEFB126Q9BYW3 111 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 IGSF5Q9NSI5 407 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 TRBV11-1A0A0K0K1C0 115 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 SUPT3HB4E1H0 165 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 UBXN8O00124 270 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 NME2P1O60361 137 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 SUPT3HO75486 399 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 SLC25A12O75746 678 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 NME2P22392 152 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 HLCSP50747 726 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 SMSP52788 366 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 LIM2P55344 173 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 ADORA2A-AS1P86434 159 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 CLNKQ7Z7G1 428 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 TBC1D1Q86TI0 1168 aaPredicted RBP19.1■□□□□ 0.65
SHMT1-209ENST00000582653 B3GNT7Q8NFL0 401 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 NXNL1Q96CM4 212 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 MAGED4Q96JG8 741 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 SERINC2Q96SA4 455 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 ATOH8Q96SQ7 321 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 EFCAB11Q9BUY7 163 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 NMRAL1Q9HBL8 299 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 PRDM7Q9NQW5 492 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 TINAGQ9UJW2 476 aa19.1■□□□□ 0.65
SHMT1-209ENST00000582653 ZNF223Q9UK11 482 aaPredicted RBP19.1■□□□□ 0.65
SHMT1-209ENST00000582653 A0A088AWK7 358 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 CYR61O00622 381 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 CLDN4O14493 209 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 FCHO1O14526 889 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 ZNHIT1O43257 154 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 SH3BGRLO75368 114 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 LTA4HP09960 611 aaKnown RBP19.09■□□□□ 0.65
SHMT1-209ENST00000582653 ZNF10P21506 573 aaPredicted RBP19.09■□□□□ 0.65
SHMT1-209ENST00000582653 CRABP2P29373 138 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 MSH2P43246 934 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 CLCN2P51788 898 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 MTTPP55157 894 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 HSD17B7P56937 341 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 IRF9Q00978 393 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 LAPTM5Q13571 262 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 BMPR2Q13873 1038 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 TERF2Q15554 542 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 UBE3DQ7Z6J8 389 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 GHDCQ8N2G8 530 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 KCTD4Q8WVF5 259 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 TMEM125Q96AQ2 219 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 COPS7BQ9H9Q2 264 aaPredicted RBP19.09■□□□□ 0.65
SHMT1-209ENST00000582653 NUDT4Q9NZJ9 180 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 DAPP1Q9UN19 280 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 PPIEQ9UNP9 301 aaKnown RBP19.09■□□□□ 0.65
SHMT1-209ENST00000582653 MEMO1Q9Y316 297 aa19.09■□□□□ 0.65
SHMT1-209ENST00000582653 RTCAO00442 366 aaKnown RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 TBCCQ15814 346 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 HIST2H2ACQ16777 129 aaPredicted RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 PAGE2BQ5JRK9 111 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 RNFT1Q5M7Z0 435 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 UBAP2Q5T6F2 1119 aaKnown RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 MROH9Q5TGP6 573 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 HIST2H2AA3Q6FI13 130 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 LRRC70Q7Z2Q7 622 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 CPSF7Q8N684 471 aaKnown RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 POGLUT1Q8NBL1 392 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 SREK1Q8WXA9 508 aaKnown RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 NCLNQ969V3 563 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 LIN28AQ9H9Z2 209 aaKnown RBP19.08■□□□□ 0.64
SHMT1-209ENST00000582653 PRM3Q9NNZ6 103 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 ZDHHC18Q9NUE0 388 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 FBXW2Q9UKT8 454 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 ACOT9Q9Y305 439 aa19.08■□□□□ 0.64
SHMT1-209ENST00000582653 HMX2A2RU54 273 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 PRKNO60260 465 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 KERAO60938 352 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 TGFB1P01137 390 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 PCNAP12004 261 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 HPDP32754 393 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 PTGER4P35408 488 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 CASP2P42575 452 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 GPR143P51810 404 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 NAB1Q13506 487 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 C8orf74Q6P047 294 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 ZNF793Q6ZN11 406 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 C16orf47Q6ZP98 133 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 DOLPP1Q86YN1 238 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 CHERPQ8IWX8 916 aaKnown RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 ZNF595Q8IYB9 648 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 CENPLQ8N0S6 344 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 RNF175Q8N4F7 328 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 ZNF473Q8WTR7 871 aaKnown RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 MAPKAP1Q9BPZ7 522 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 MS4A8Q9BY19 250 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 KCMF1Q9P0J7 381 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 OPTCQ9UBM4 332 aa19.07■□□□□ 0.64
SHMT1-209ENST00000582653 MRPS33Q9Y291 106 aaKnown RBP19.07■□□□□ 0.64
SHMT1-209ENST00000582653 KLRC4-KLRK1H3BQV0 150 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 K7EPI3 171 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms