RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	SHISA5	Q8N114	240 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	BEST3	Q8N1M1	668 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	TEX9	Q8N6V9	391 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	EIF1AD	Q8N9N8	165 aa	Known RBP	11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	TMEM178A	Q8NBL3	297 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	NFAM1	Q8NET5	270 aa	Predicted RBP	11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	B3GNT7	Q8NFL0	401 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	PRR7	Q8TB68	274 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	NR4A3	Q92570	626 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	MTBP	Q96DY7	904 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	MAGEB10	Q96LZ2	347 aa	Predicted RBP	11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	NECTIN3	Q9NQS3	549 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	PRTFDC1	Q9NRG1	225 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	FETUB	Q9UGM5	382 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	SLC5A6	Q9Y289	635 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	ASB1	Q9Y576	335 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	NAV2	Q8IVL1	2488 aa		11.79	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	FAM227A	F5H4B4	570 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	STX16-NPEPL1	H3BU86	382 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	E2F3	O00716	465 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	FCHO1	O14526	889 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	STX16	O14662	325 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	SNRPA	P09012	282 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	CD46	P15529	392 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	HIST1H1T	P22492	207 aa	Predicted RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	PTX3	P26022	381 aa	Predicted RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	TRHR	P34981	398 aa	Predicted RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	CLCN2	P51788	898 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	LIM2	P55344	173 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	PER3	P56645	1201 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	IRF9	Q00978	393 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	SLC13A2	Q13183	592 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	ELAVL1	Q15717	326 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	AP5B1	Q2VPB7	878 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	ZNF766	Q5HY98	468 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	TECRL	Q5HYJ1	363 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	CYP4X1	Q8N118	509 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	TMEM132C	Q8N3T6	1108 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	L3MBTL4	Q8NA19	623 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	MDS2	Q8NDY4	140 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	MRRF	Q96E11	262 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	VMP1	Q96GC9	406 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	SCMH1	Q96GD3	660 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	C5orf34	Q96MH7	638 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	F2RL3	Q96RI0	385 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	DEFB126	Q9BYW3	111 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	VPS11	Q9H270	941 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	ACTR8	Q9H981	624 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	ADAP2	Q9NPF8	381 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	KCMF1	Q9P0J7	381 aa		11.78	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	UNC79	Q9P2D8	2635 aa		11.77	□□□□□ -0.52
CDK5RAP3-222	ENST00000581708	GABRR3	A8MPY1	467 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FOXE1	O00358	373 aa	Predicted RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SMIM24	O75264	130 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SEMA7A	O75326	666 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	STS	P08842	583 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ATP5A1	P25705	553 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CERS1	P27544	350 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PPP2R1B	P30154	601 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GMPR	P36959	345 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CD96	P40200	585 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CUL3	Q13618	768 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GTF2H2	Q13888	395 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	C4orf17	Q53FE4	359 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GTF2H2C	Q6P1K8	395 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TIFAB	Q6ZNK6	161 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	UBE3D	Q7Z6J8	389 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ACOT4	Q8N9L9	421 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FAM98A	Q8NCA5	519 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	APCDD1L	Q8NCL9	501 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MORN4	Q8NDC4	146 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	DCAKD	Q8WVC6	231 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	DAZL	Q92904	295 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RGMA	Q96B86	450 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TAAR6	Q96RI8	345 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NPAS2	Q99743	824 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MRPL57	Q9BQC6	102 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CCDC77	Q9BR77	488 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MRPL46	Q9H2W6	279 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	IPPK	Q9H8X2	491 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	VTI1B	Q9UEU0	232 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PHF11	Q9UIL8	331 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CLDN16	Q9Y5I7	305 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CENPE	Q02224	2701 aa		11.77	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SVIL	O95425	2214 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708		A0A0G2JN53	185 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708		A0A1B0GUH1	482 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	EXOC1L	A0A1B0GW35	172 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ASPDH	A6ND91	283 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZFAND5	O76080	213 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MYO1D	O94832	1006 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CLDN9	O95484	217 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PCNA	P12004	261 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	EEF1D	P29692	281 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SSR2	P43308	183 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CYB561	P49447	251 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GPR143	P51810	404 aa		11.76	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TDGF1P3	P51864	188 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms