RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZBTB46Q86UZ6 589 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ANKRD53Q8N9V6 530 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 OR10G2Q8NGC3 310 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 MIPOL1Q8TD10 442 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 TRUB1Q8WWH5 349 aaKnown RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 FGF13Q92913 245 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ERLEC1Q96DZ1 483 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 KCNC2Q96PR1 638 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 NRTNQ99748 197 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 IER2Q9BTL4 223 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 YIPF2Q9BWQ6 316 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 LGR4Q9BXB1 951 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ZNF717Q9BY31 904 aaPredicted RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 PELI2Q9HAT8 420 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ACOT13Q9NPJ3 140 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 THAP10Q9P2Z0 257 aaPredicted RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 TAC3Q9UHF0 121 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 HCN2Q9UL51 889 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 RNF6Q9Y252 685 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ZNF451Q9Y4E5 1061 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 KIAA0100Q14667 2235 aaKnown RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 IGLON5A6NGN9 336 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ANKDD1BA6NHY2 528 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 A8MVJ9 347 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 RPN2P04844 631 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 PCCBP05166 539 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CXCR2P25025 360 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 SOAT1P35610 550 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 GGT2P36268 569 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 HSD17B2P37059 387 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 OPRD1P41143 372 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CDH12P55289 794 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 SPIBQ01892 262 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 PDGFRLQ15198 375 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 Q6ZPB1 254 aaPredicted RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 ARMC8Q8IUR7 673 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ADGRF3Q8IZF5 1079 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 SLC15A4Q8N697 577 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ABHD11Q8NFV4 315 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 GEMIN6Q8WXD5 167 aaKnown RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 AIF1LQ9BQI0 150 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 MENTQ9BUN1 341 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 MS4A8Q9BY19 250 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CXorf36Q9H7Y0 433 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 PALMDQ9NP74 551 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 WASH6PQ9NQA3 447 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 TM7SF3Q9NS93 570 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 RLIMQ9NVW2 624 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 WBP1LQ9NX94 342 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 WBP11Q9Y2W2 641 aaKnown RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 DNMT3AQ9Y6K1 912 aaPredicted RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 DENND4AQ7Z401 1863 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PRAMEF33A0A0G2JMD5 474 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 RTCAO00442 366 aaKnown RBP9.61□□□□□ -0.87
VPS53-220ENST00000576149 SLC22A1O15245 554 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 MAGEB3O15480 346 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 TBX19O60806 448 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PRAMEF10O60809 474 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ZBTB11O95625 1053 aaPredicted RBP9.61□□□□□ -0.87
VPS53-220ENST00000576149 FADS2O95864 444 aaKnown RBP9.61□□□□□ -0.87
VPS53-220ENST00000576149 VIPP01282 170 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 DRD3P35462 400 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 BSGP35613 385 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 GNALP38405 381 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ST13P50502 369 aaKnown RBP9.61□□□□□ -0.87
VPS53-220ENST00000576149 DSTNP60981 165 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 EXOC3L2Q2M3D2 409 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 WSCD2Q2TBF2 565 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 FAM46CQ5VWP2 391 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 MLIPQ5VWP3 458 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 CCDC81Q6ZN84 652 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SLC30A8Q8IWU4 369 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 LGI4Q8N135 537 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PARP8Q8N3A8 854 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 OR52J3Q8NH60 311 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ZFPM2Q8WW38 1151 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 DNASE1L2Q92874 299 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 TM4SF18Q96CE8 201 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 F2RL3Q96RI0 385 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 NLNQ9BYT8 704 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SLC7A5P2Q9GIP4 190 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PCBD2Q9H0N5 130 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 NECTIN3Q9NQS3 549 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 OBP2AQ9NY56 170 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ANGPT4Q9Y264 503 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 POFUT2Q9Y2G5 429 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PCDHGA2Q9Y5H1 932 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 CORINQ9Y5Q5 1042 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 CFAP20Q9Y6A4 193 aaKnown RBP9.61□□□□□ -0.87
VPS53-220ENST00000576149 DGKBQ9Y6T7 804 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 A0A1W2PPV9 198 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 FCARP24071 287 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PSMB9P28065 219 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 XCR1P46094 333 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 LIMS1P48059 325 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 CCR8P51685 355 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 HMGA2P52926 109 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 MAPK12P53778 367 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 TAS2R38P59533 333 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ADPRMQ3LIE5 342 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms