RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CCT6BQ92526 530 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 SERINC2Q96SA4 455 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 CAPS2Q9BXY5 557 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 DEFB127Q9H1M4 99 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 HPF1Q9NWY4 346 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 GPRC5BQ9NZH0 403 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 MYOTQ9UBF9 498 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 MRPS33Q9Y291 106 aaKnown RBP19.58■□□□□ 0.72
VPS53-216ENST00000574029 NKX2-6A6NCS4 301 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 TOXO94900 526 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 OR6B1O95007 311 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 TCP1P17987 556 aaKnown RBP19.57■□□□□ 0.72
VPS53-216ENST00000574029 RGS9BPQ6ZS82 235 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 VN1R5Q7Z5H4 357 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 CLNKQ7Z7G1 428 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 OR2M7Q8NG81 312 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 ASB15Q8WXK1 588 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 UCK2Q9BZX2 261 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 REXO4Q9GZR2 422 aaKnown RBP19.57■□□□□ 0.72
VPS53-216ENST00000574029 ZDHHC11Q9H8X9 412 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 LIN28AQ9H9Z2 209 aaKnown RBP19.57■□□□□ 0.72
VPS53-216ENST00000574029 POPDC3Q9HBV1 291 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 MOCS1Q9NZB8 636 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 DAPP1Q9UN19 280 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 HIVEP1P15822 2718 aa19.57■□□□□ 0.72
VPS53-216ENST00000574029 FOXO6A8MYZ6 492 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 CTNSO60931 367 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 HPDP32754 393 aaPredicted RBP19.56■□□□□ 0.72
VPS53-216ENST00000574029 SOX3P41225 446 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 PLA2G16P53816 162 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 MTTPP55157 894 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 LIM2P55344 173 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 ARL4CP56559 192 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 PPIAP62937 165 aaKnown RBP19.56■□□□□ 0.72
VPS53-216ENST00000574029 BMPR2Q13873 1038 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 TGFBIQ15582 683 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 TRIM40Q6P9F5 258 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 ABHD17CQ6PCB6 329 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 IL20RBQ6UXL0 311 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 SYDE1Q6ZW31 735 aaPredicted RBP19.56■□□□□ 0.72
VPS53-216ENST00000574029 ANKMY2Q8IV38 441 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 RASL10BQ96S79 203 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 CSF3RQ99062 836 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 MCMBPQ9BTE3 642 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 EHD1Q9H4M9 534 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 TNFRSF10DQ9UBN6 386 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 CLCA3PQ9Y6N3 262 aa19.56■□□□□ 0.72
VPS53-216ENST00000574029 ANKDD1BA6NHY2 528 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 FAM90A27PA6NNH2 459 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 ACOT7O00154 380 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 TAPBPO15533 448 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PRAMEF4O60810 478 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 WISP3O95389 354 aaPredicted RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 CERS1P27544 350 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 MSX1P28360 303 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 GGT5P36269 586 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 NUP107P57740 925 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PLGLB1Q02325 96 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PMPCAQ10713 525 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 GXYLT1Q4G148 440 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PRAMEF9Q5VWM5 478 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 ADNP2Q6IQ32 1131 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 HSDL2Q6YN16 418 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 ACAD11Q709F0 780 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 CCDC71Q8IV32 467 aaPredicted RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 DMRTC2Q8IXT2 367 aaPredicted RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 MORN4Q8NDC4 146 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PTPMT1Q8WUK0 201 aaPredicted RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 DAZLQ92904 295 aaKnown RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 VPS39Q96JC1 886 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 CAPZA3Q96KX2 299 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 TMEM79Q9BSE2 394 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 TTTY12Q9BZ98 90 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 DERL2Q9GZP9 239 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 RHOJQ9H4E5 214 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 KCNJ16Q9NPI9 418 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 PRDM7Q9NQW5 492 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 VTI1BQ9UEU0 232 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 ZNF490Q9ULM2 529 aaPredicted RBP19.55■□□□□ 0.72
VPS53-216ENST00000574029 MED13LQ71F56 2210 aa19.55■□□□□ 0.72
VPS53-216ENST00000574029 CCDC168Q8NDH2 2452 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 EML6Q6ZMW3 1958 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 A0A0G2JMM0 328 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 A0A1W2PPB8 328 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 A0A1W2PRS3 328 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 NCF1BA6NI72 391 aaPredicted RBP19.54■□□□□ 0.72
VPS53-216ENST00000574029 FAM166BA8MTA8 275 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 NCF1CA8MVU1 366 aaPredicted RBP19.54■□□□□ 0.72
VPS53-216ENST00000574029 KIR3DP1A8MWS1 328 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 WWP2O00308 870 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 TP73O15350 636 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 GLSO94925 669 aaPredicted RBP19.54■□□□□ 0.72
VPS53-216ENST00000574029 IFNA16P05015 189 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 NCF1P14598 390 aaPredicted RBP19.54■□□□□ 0.72
VPS53-216ENST00000574029 HK2P52789 917 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 RCN2Q14257 317 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 EFTUD2Q15029 972 aaKnown RBP eCLIP19.54■□□□□ 0.72
VPS53-216ENST00000574029 SLC22A16Q86VW1 577 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 TCAIMQ8N3R3 496 aa19.54■□□□□ 0.72
VPS53-216ENST00000574029 FBXO36Q8NEA4 188 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms