RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NDUFAF5Q5TEU4 345 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 DLEU7Q6UYE1 221 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 DHDDSQ86SQ9 333 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 TICAM1Q8IUC6 712 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 NAXDQ8IW45 347 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 TTC29Q8NA56 475 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 FAM47BQ8NA70 645 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 UTP4Q969X6 686 aaKnown RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 CDRT15Q96T59 188 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 MAPKAP1Q9BPZ7 522 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 GPATCH1Q9BRR8 931 aaKnown RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 NPLQ9BXD5 320 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 SPRTNQ9H040 489 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 ANKHQ9HCJ1 492 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 LYRM4Q9HD34 91 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 IRAK4Q9NWZ3 460 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 TEX10Q9NXF1 929 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 EHD3Q9NZN3 535 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 PHF11Q9UIL8 331 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 BTNL2Q9UIR0 455 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 SERTAD3Q9UJW9 196 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 FBXW2Q9UKT8 454 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 ATG4BQ9Y4P1 393 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 PCDHA9Q9Y5H5 950 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 A0A096LPI6 279 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 A0A1W2PR48 441 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 C1orf226A1L170 272 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 HYKKA2RU49 373 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 TMEM150CB9EJG8 249 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 FXYD1O00168 92 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 RNASET2O00584 256 aaKnown RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 FOXD2O60548 495 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 ERN1O75460 977 aaKnown RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 FOLR1P15328 257 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 ALDH9A1P49189 494 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SNRPNP63162 240 aaKnown RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 PLIN5Q00G26 463 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 TRA2AQ13595 282 aaKnown RBP eCLIP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 RUNX2Q13950 521 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 GPR19Q15760 415 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 FAM214AQ32MH5 1076 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 AASDHQ4L235 1098 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 ZNF385BQ569K4 471 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 C6orf10Q5SRN2 563 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 BNC2Q6ZN30 1099 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 PDSS2Q86YH6 399 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SCUBE1Q8IWY4 988 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 MMP21Q8N119 569 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 EFCAB3Q8N7B9 438 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 CCDC74BQ96LY2 380 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 CCDC115Q96NT0 180 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 CGREF1Q99674 301 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 CDC6Q99741 560 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 CLK4Q9HAZ1 481 aaKnown RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 FANCEQ9HB96 536 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 PARD6AQ9NPB6 346 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SPAG4Q9NPE6 437 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SERHLQ9NQF3 203 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 RXFP3Q9NSD7 469 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 MS4A12Q9NXJ0 267 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 TAS2R7Q9NYW3 318 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 KCMF1Q9P0J7 381 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SLAMF8Q9P0V8 285 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 NAALAD2Q9Y3Q0 740 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.96□□□□□ -0.33
CCDC40-209ENST00000573474 SPACA6W5XKT8 324 aa12.96□□□□□ -0.33
CCDC40-209ENST00000573474 ASXL3Q9C0F0 2248 aa12.96□□□□□ -0.34
CCDC40-209ENST00000573474 C15orf38-AP3S2A0A0A6YYH1 394 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 C4orf47A7E2U8 309 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 D6RAR5 112 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 H3BMH7 237 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 RFXANKO14593 260 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 OR2B3O76000 313 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 AIFM1O95831 613 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 IL1RNP18510 177 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 CPN2P22792 545 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 TLX1P31314 330 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-209ENST00000573474 BUD31P41223 144 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-209ENST00000573474 LIM2P55344 173 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 ITGA1P56199 1179 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 ACY1Q03154 408 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 SPIDRQ14159 915 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 CAPRIN1Q14444 709 aaKnown RBP12.95□□□□□ -0.34
CCDC40-209ENST00000573474 MUM1Q2TAK8 710 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 LRIF1Q5T3J3 769 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 TLDC1Q6P9B6 456 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 PGM2L1Q6PCE3 622 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 PRSS41Q7RTY9 318 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 ARPINQ7Z6K5 226 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 ANKRD46Q86W74 232 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 SLITRK4Q8IW52 837 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 ULK2Q8IYT8 1036 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 GPR135Q8IZ08 494 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 FBXW8Q8N3Y1 598 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 OR1L3Q8NH93 324 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 C10orf90Q96M02 699 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 INPP5KQ9BT40 448 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 PAIP1Q9H074 479 aaKnown RBP12.95□□□□□ -0.34
CCDC40-209ENST00000573474 PRDM9Q9NQV7 894 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 FAM86C1Q9NVL1 165 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms