RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FOLR3P41439 243 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 RAB8AP61006 207 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ABCE1P61221 599 aaKnown RBP19.45■□□□□ 0.7
VPS53-210ENST00000571456 STX3Q13277 289 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 NKG7Q16617 165 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 OR4C11Q6IEV9 310 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ADNP2Q6IQ32 1131 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ZCCHC23Q6ZST2 131 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 NUDT13Q86X67 352 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 PDSS2Q86YH6 399 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ZCCHC7Q8N3Z6 543 aaKnown RBP19.45■□□□□ 0.7
VPS53-210ENST00000571456 OR51Q1Q8NH59 317 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 MIEF2Q96C03 454 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ILKAPQ9H0C8 392 aaPredicted RBP19.45■□□□□ 0.7
VPS53-210ENST00000571456 OR51B5Q9H339 312 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 AKIRIN1Q9H9L7 192 aaPredicted RBP19.45■□□□□ 0.7
VPS53-210ENST00000571456 LYRM4Q9HD34 91 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 PRDM7Q9NQW5 492 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 ACSS2Q9NR19 701 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 MS4A12Q9NXJ0 267 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 VPS29Q9UBQ0 182 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 MAU2Q9Y6X3 613 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 WDR91A4D1P6 747 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 SGK494L7N484 410 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 CREG1O75629 220 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 RNH1P13489 461 aaKnown RBP19.44■□□□□ 0.7
VPS53-210ENST00000571456 HIST1H1TP22492 207 aaPredicted RBP19.44■□□□□ 0.7
VPS53-210ENST00000571456 SSR2P43308 183 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 NEK2P51955 445 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 PLA2G16P53816 162 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 BTN3A2P78410 334 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 SSPNQ14714 243 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 SLC9A5Q14940 896 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 KANK2Q63ZY3 851 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 TRIM46Q7Z4K8 759 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 STT3BQ8TCJ2 826 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 AICDAQ9GZX7 198 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 ACTL8Q9H568 366 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 DDX31Q9H8H2 851 aaKnown RBP19.44■□□□□ 0.7
VPS53-210ENST00000571456 SEMA3GQ9NS98 782 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 THAP1Q9NVV9 213 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 HAO1Q9UJM8 370 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 MRPS33Q9Y291 106 aaKnown RBP19.44■□□□□ 0.7
VPS53-210ENST00000571456 RAP2CQ9Y3L5 183 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 TRAF6Q9Y4K3 522 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 MED13Q9UHV7 2174 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 ITPR3Q14573 2671 aa19.44■□□□□ 0.7
VPS53-210ENST00000571456 CCDC88CQ9P219 2028 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 NPIPB8E9PQR5 432 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 PSMD12O00232 456 aaPredicted RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 SLC28A1O00337 649 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 RDH16O75452 317 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 KLF7O75840 302 aaPredicted RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 ZGLP1P0C6A0 271 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 NR1D1P20393 614 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 BGNP21810 368 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 SLC1A6P48664 564 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 SPIN4Q56A73 249 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 LCN10Q6JVE6 187 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 RAB43Q86YS6 212 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 METTL27Q8N6F8 245 aaPredicted RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 MGARPQ8TDB4 240 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 STARD8Q92502 1023 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 MTFMTQ96DP5 389 aaKnown RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 CATSPER2Q96P56 530 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 SPSB2Q99619 263 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 YIPF2Q9BWQ6 316 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 MANSC1Q9H8J5 431 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 LYARQ9NX58 379 aaKnown RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 PHF11Q9UIL8 331 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 SLC12A4Q9UP95 1085 aa19.43■□□□□ 0.7
VPS53-210ENST00000571456 SPENQ96T58 3664 aaKnown RBP19.43■□□□□ 0.7
VPS53-210ENST00000571456 NUP210LQ5VU65 1888 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 PLPP1O14494 284 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 GUCY1B2O75343 617 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 BMP10O95393 424 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 CHRNGP07510 517 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 PRPH2P23942 346 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 ATP5A1P25705 553 aaKnown RBP19.42■□□□□ 0.7
VPS53-210ENST00000571456 XCR1P46094 333 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 GSTM5P46439 218 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 TUBB8Q3ZCM7 444 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 SGO1Q5FBB7 561 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 SH2D4BQ5SQS7 431 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 PRSS41Q7RTY9 318 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 UBE3DQ7Z6J8 389 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 ATCAYQ86WG3 371 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 METTL4Q8N3J2 472 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 ACOT4Q8N9L9 421 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.42■□□□□ 0.7
VPS53-210ENST00000571456 DYDC1Q8WWB3 177 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 THAP4Q8WY91 577 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 MIB2Q96AX9 1013 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 TBC1D20Q96BZ9 403 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 MLXIPLQ9NP71 852 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 INTS9Q9NV88 658 aaKnown RBP19.42■□□□□ 0.7
VPS53-210ENST00000571456 SIRT5Q9NXA8 310 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 CTSFQ9UBX1 484 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 DAPP1Q9UN19 280 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 PTRH2Q9Y3E5 179 aaKnown RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms