RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KRT36O76013 467 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 EML2O95834 649 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 WNT1P04628 370 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 SERPIND1P05546 499 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PROS1P07225 676 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 IFI6P09912 130 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FAM58BPP0C7Q3 252 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 GLB1P16278 677 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 POLR2CP19387 275 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 TCN1P20061 433 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 UQCRC2P22695 453 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PSMB5P28074 263 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 TPP2P29144 1249 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 NTSP30990 170 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 MPIP34949 423 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 BCL6P41182 706 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 BUD31P41223 144 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 PTDSS1P48651 473 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 HSPA13P48723 471 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PXNP49023 591 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 CCT8P50990 548 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 MAPK10P53779 464 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 MEF2AQ02078 507 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 SLAMF1Q13291 335 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 GNA13Q14344 377 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 CAPRIN1Q14444 709 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 TCEA2Q15560 299 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FAM98BQ52LJ0 330 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 TCTE1Q5JU00 501 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 GARNL3Q5VVW2 1013 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PMS2CLQ68D20 193 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 GLYATQ6IB77 296 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 OR4F3Q6IEY1 312 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FBXO42Q6P3S6 717 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 RNF44Q7L0R7 432 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 KMT5CQ86Y97 462 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PLXDC1Q8IUK5 500 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PQLC1Q8N2U9 271 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ARL10Q8N8L6 244 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FAM47BQ8NA70 645 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ZNF548Q8NEK5 533 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 OR10G6Q8NH81 332 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 CLHC1Q8NHS4 586 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 CDC26Q8NHZ8 85 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 TM4SF18Q96CE8 201 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ZC3H10Q96K80 434 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 EGLN2Q96KS0 407 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 OR2A5Q96R48 311 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ELF4Q99607 663 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 DPH2Q9BQC3 489 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 CPPED1Q9BRF8 314 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 OSBPL10Q9BXB5 764 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 MAGIXQ9H6Y5 334 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 LYRM4Q9HD34 91 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 SERHLQ9NQF3 203 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 SEMA3GQ9NS98 782 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 CCM2LQ9NUG4 571 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 SPHK1Q9NYA1 384 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 VAPAQ9P0L0 249 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ANAPC2Q9UJX6 822 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 RPS6KA6Q9UK32 745 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 POMT2Q9UKY4 750 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 CNOT11Q9UKZ1 510 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 PNMA8BQ9ULN7 279 aaPredicted RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 SAMD4AQ9UPU9 718 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 PCDHB14Q9Y5E9 798 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 SLC22A7Q9Y694 548 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ZNF780BQ9Y6R6 833 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PIKFYVEQ9Y2I7 2098 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 ZFHX4Q86UP3 3567 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 DHRS12A0PJE2 317 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 H0Y3Z8 333 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CASQ2O14958 399 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 TOX3O15405 576 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 ERI3O43414 337 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 B3GALT2O43825 422 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 LRATO95237 230 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CPSF4O95639 269 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 AGR2O95994 175 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 SYPP08247 313 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 IL3P08700 152 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 LAMP1P11279 417 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PIM1P11309 404 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 ACADSP16219 412 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 GGT1P19440 569 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CDH3P22223 829 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 FASP25445 335 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ATP5A1P25705 553 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 PEBP1P30086 187 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 PPP2R1BP30154 601 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 FRKP42685 505 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 CTSKP43235 329 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CAPZBP47756 277 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PLA2G16P53816 162 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 MANFP55145 182 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 POLE2P56282 527 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 WNT3P56703 355 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CYP4F2P78329 520 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 MS4A2Q01362 244 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CHRNB3Q05901 458 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms