RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 UCN3Q969E3 161 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 OR1F2PQ96R84 312 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 PAIP2Q9BPZ3 127 aaKnown RBP18.41■□□□□ 0.54
CLN3-225ENST00000566824 C20orf27Q9GZN8 174 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 CLK4Q9HAZ1 481 aaKnown RBP18.41■□□□□ 0.54
CLN3-225ENST00000566824 FBXL4Q9UKA2 621 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 FBXW2Q9UKT8 454 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 FIS1Q9Y3D6 152 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 TNRC6AQ8NDV7 1962 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 A0A0A6YYD5 115 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 IGHV3-20A0A0C4DH32 117 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 BIRC5O15392 142 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 ULK1O75385 1050 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 PRKRAO75569 313 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 MAOAP21397 527 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 HPDP32754 393 aaPredicted RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 HNRNPH2P55795 449 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 SKP1P63208 163 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 EEF1A2Q05639 463 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 GALNT1Q10472 559 aaPredicted RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 BORAQ6PGQ7 559 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 TMEM205Q6UW68 189 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 METTL4Q8N3J2 472 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 SRFBP1Q8NEF9 429 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 AGR3Q8TD06 166 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 THAP4Q8WY91 577 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 TRMOQ9BU70 441 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 TUBB1Q9H4B7 451 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 DDX31Q9H8H2 851 aaKnown RBP18.4■□□□□ 0.54
CLN3-225ENST00000566824 BRF2Q9HAW0 419 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 NECTIN3Q9NQS3 549 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 CLDN16Q9Y5I7 305 aa18.4■□□□□ 0.54
CLN3-225ENST00000566824 A0A088AWK7 358 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 MYOCOSA0A1B0GUC4 107 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 WASHC1A8K0Z3 465 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 AZIN1O14977 448 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 SEMA3DO95025 777 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 FAM87AP0C7U9 286 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ZNF10P21506 573 aaPredicted RBP18.39■□□□□ 0.53
CLN3-225ENST00000566824 TPP2P29144 1249 aaPredicted RBP18.39■□□□□ 0.53
CLN3-225ENST00000566824 UGT3A2Q3SY77 523 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 TUBB8Q3ZCM7 444 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 C10orf62Q5T681 223 aaPredicted RBP18.39■□□□□ 0.53
CLN3-225ENST00000566824 HHATQ5VTY9 493 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 MRM1Q6IN84 353 aaKnown RBP18.39■□□□□ 0.53
CLN3-225ENST00000566824 RIPOR1Q6ZS17 1223 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 COMMD6Q7Z4G1 85 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ANKRD37Q7Z713 158 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 EXD3Q8N9H8 876 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 CATSPER2Q96P56 530 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ROGDIQ9GZN7 287 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ZDHHC2Q9UIJ5 367 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ATG4BQ9Y4P1 393 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 ASB4Q9Y574 426 aa18.39■□□□□ 0.53
CLN3-225ENST00000566824 CRCPO75575 148 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 IGHEP01854 428 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 ITGB2P05107 769 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 SERPINE1P05121 402 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 KLK1P06870 262 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 C8orf89P0DMQ9 161 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 UROSP10746 265 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 COX6A1P12074 109 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 IL10P22301 178 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 RAE1P78406 368 aaKnown RBP18.38■□□□□ 0.53
CLN3-225ENST00000566824 Q0VFX4 171 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 CSTF3Q12996 717 aaKnown RBP18.38■□□□□ 0.53
CLN3-225ENST00000566824 PCOLCEQ15113 449 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 KANK2Q63ZY3 851 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 C18orf63Q68DL7 685 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 MED25Q71SY5 747 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 ZCCHC7Q8N3Z6 543 aaKnown RBP18.38■□□□□ 0.53
CLN3-225ENST00000566824 C1orf52Q8N6N3 182 aaKnown RBP18.38■□□□□ 0.53
CLN3-225ENST00000566824 PLPP5Q8NEB5 264 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 CHTF18Q8WVB6 975 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 APOBEC4Q8WW27 367 aaKnown RBP18.38■□□□□ 0.53
CLN3-225ENST00000566824 APIPQ96GX9 242 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 CENPKQ9BS16 269 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 ING2Q9H160 280 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 LYRM4Q9HD34 91 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 VPS29Q9UBQ0 182 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 CCL27Q9Y4X3 112 aa18.38■□□□□ 0.53
CLN3-225ENST00000566824 LOC102723996A0A087X1L8 192 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 IGKV3D-11A0A0A0MRZ8 115 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 A0A1W2PR48 441 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 ARHGAP10A1A4S6 786 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 SERTM1A2A2V5 107 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 PSMD12O00232 456 aaPredicted RBP18.37■□□□□ 0.53
CLN3-225ENST00000566824 CELA2AP08217 269 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 FAM58BPP0C7Q3 252 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 ACPPP15309 386 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 PPP2R1BP30154 601 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 ARFIP1P53367 373 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 SLC18A1P54219 525 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 RHDQ02161 417 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 BTKQ06187 659 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 DCAF10Q5QP82 559 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 SH2D4BQ5SQS7 431 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 CLNKQ7Z7G1 428 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 NUDT13Q86X67 352 aa18.37■□□□□ 0.53
CLN3-225ENST00000566824 SCUBE1Q8IWY4 988 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms