RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SPATA6LQ8N4H0 392 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 TTLQ8NG68 377 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 ASB5Q8WWX0 329 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 ASB15Q8WXK1 588 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 RND1Q92730 232 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 REXO4Q9GZR2 422 aaKnown RBP15.67■□□□□ 0.1
CLN3-211ENST00000564091 TP63Q9H3D4 680 aaPredicted RBP15.67■□□□□ 0.1
CLN3-211ENST00000564091 ADAP2Q9NPF8 381 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 MYOTQ9UBF9 498 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 NPIPA2E9PIF3 369 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 NPIPA3F8WFD2 350 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 CYR61O00622 381 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 FANCGO15287 622 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 PRAMEF4O60810 478 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 PIAS1O75925 651 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 TOXO94900 526 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 SOX3P41225 446 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 LIM2P55344 173 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 NUP107P57740 925 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 TFF3Q07654 80 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 FASTKD3Q14CZ7 662 aaKnown RBP15.66■□□□□ 0.1
CLN3-211ENST00000564091 ZNF750Q32MQ0 723 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 PRAMEF9Q5VWM5 478 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 ADAMTSL2Q86TH1 951 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 KLHL7Q8IXQ5 586 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 ZNF595Q8IYB9 648 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 KRT78Q8N1N4 520 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 ZNF321PQ8N8H1 164 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 OR2M7Q8NG81 312 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 OR5M9Q8NGP3 310 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 ESAMQ96AP7 390 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 LRRC39Q96DD0 335 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 CAPZA3Q96KX2 299 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 RASL10BQ96S79 203 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 KCNJ16Q9NPI9 418 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 MRPS33Q9Y291 106 aaKnown RBP15.66■□□□□ 0.1
CLN3-211ENST00000564091 CLCA3PQ9Y6N3 262 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 CACNA1CQ13936 2221 aa15.66■□□□□ 0.1
CLN3-211ENST00000564091 CES2O00748 559 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 TAPBPO15533 448 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 CLEC3AO75596 197 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 ARL4CP56559 192 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 FRG1Q14331 258 aaKnown RBP15.65■□□□□ 0.1
CLN3-211ENST00000564091 ELAVL1Q15717 326 aaKnown RBP15.65■□□□□ 0.1
CLN3-211ENST00000564091 ADPRMQ3LIE5 342 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 GXYLT1Q4G148 440 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 TRIM40Q6P9F5 258 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 ABHD17CQ6PCB6 329 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 HSDL2Q6YN16 418 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 SPNS3Q6ZMD2 512 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 TMEM132CQ8N3T6 1108 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 FBXO36Q8NEA4 188 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 OR2L5Q8NG80 312 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 OR5M3Q8NGP4 307 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 PTPMT1Q8WUK0 201 aaPredicted RBP15.65■□□□□ 0.1
CLN3-211ENST00000564091 SEC16BQ96JE7 1060 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 F2RL3Q96RI0 385 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 SERINC2Q96SA4 455 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 TMEM79Q9BSE2 394 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 ALOXE3Q9BYJ1 711 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 NT5DC2Q9H857 520 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 PNPLA3Q9NST1 481 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 MOCS1Q9NZB8 636 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 ZNF490Q9ULM2 529 aaPredicted RBP15.65■□□□□ 0.1
CLN3-211ENST00000564091 DAPP1Q9UN19 280 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 LIPGQ9Y5X9 500 aa15.65■□□□□ 0.1
CLN3-211ENST00000564091 A0A088AWK7 358 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 ANKDD1BA6NHY2 528 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 ZNF354AO60765 605 aaPredicted RBP15.64■□□□□ 0.09
CLN3-211ENST00000564091 CTNSO60931 367 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 TNNI3P19429 210 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 ZNF10P21506 573 aaPredicted RBP15.64■□□□□ 0.09
CLN3-211ENST00000564091 MTTPP55157 894 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 PDIA2Q13087 525 aaKnown RBP15.64■□□□□ 0.09
CLN3-211ENST00000564091 TGFBIQ15582 683 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 PAOXQ6QHF9 649 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 GPALPP1Q8IXQ4 340 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 DMRTC2Q8IXT2 367 aaPredicted RBP15.64■□□□□ 0.09
CLN3-211ENST00000564091 DAZLQ92904 295 aaKnown RBP15.64■□□□□ 0.09
CLN3-211ENST00000564091 VPS39Q96JC1 886 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 TTTY12Q9BZ98 90 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 TRIM31Q9BZY9 425 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 OR8D2Q9GZM6 311 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 ZDHHC11Q9H8X9 412 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 PRDM7Q9NQW5 492 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 WWOXQ9NZC7 414 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 TNFRSF10DQ9UBN6 386 aa15.64■□□□□ 0.09
CLN3-211ENST00000564091 NF1P21359 2839 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 ACOT7O00154 380 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 TP73O15350 636 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 GLSO94925 669 aaPredicted RBP15.63■□□□□ 0.09
CLN3-211ENST00000564091 GSTM2P28161 218 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 MSX1P28360 303 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 HSPA7P48741 367 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 HK2P52789 917 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 DR1Q01658 176 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 ID2Q02363 134 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 GTF3C1Q12789 2109 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 STX4Q12846 297 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 DOC2AQ14183 400 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms