RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DMGDHQ9UI17 866 aaKnown RBP15.76■□□□□ 0.11
CLK3-210ENST00000563112 DAPP1Q9UN19 280 aa15.76■□□□□ 0.11
CLK3-210ENST00000563112 MAN1A2O60476 641 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 MYO1DO94832 1006 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 UNC5CO95185 931 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 STSP08842 583 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 DEKP35659 375 aaKnown RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 CYB561P49447 251 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 ALDH18A1P54886 795 aaKnown RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 LIM2P55344 173 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 MLF1P58340 268 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 RBPJQ06330 500 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 PCDH1Q08174 1060 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 PFKFB4Q16877 469 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 SLC25A25Q6KCM7 469 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 MAMDC2Q7Z304 686 aaPredicted RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 MYLK4Q86YV6 388 aaPredicted RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 LAS2Q8IYD9 372 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 B3GNT7Q8NFL0 401 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 CMTM7Q96FZ5 175 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 FMO2Q99518 471 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 CCDC77Q9BR77 488 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 CENPKQ9BS16 269 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 MS4A8Q9BY19 250 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 VPS11Q9H270 941 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 CDC42EP4Q9H3Q1 356 aaKnown RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 LYRM4Q9HD34 91 aa15.75■□□□□ 0.11
CLK3-210ENST00000563112 TNPO3Q9Y5L0 923 aaKnown RBP15.75■□□□□ 0.11
CLK3-210ENST00000563112 TRBV11-1A0A0K0K1C0 115 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 HMX2A2RU54 273 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 CTNSO60931 367 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 ACSL3O95573 720 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 IFNA16P05015 189 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 SP1P08047 785 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 MTHFD2P13995 350 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 TPP2P29144 1249 aaPredicted RBP15.74■□□□□ 0.11
CLK3-210ENST00000563112 SERPINB9P50453 376 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 ST13P50502 369 aaKnown RBP15.74■□□□□ 0.11
CLK3-210ENST00000563112 KCNK10P57789 538 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 PHEXP78562 749 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 STX4Q12846 297 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 NAA30Q147X3 362 aaPredicted RBP15.74■□□□□ 0.11
CLK3-210ENST00000563112 SETDB1Q15047 1291 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.74■□□□□ 0.11
CLK3-210ENST00000563112 GRHL2Q6ISB3 625 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 TMEM132CQ8N3T6 1108 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 NOA1Q8NC60 698 aaKnown RBP15.74■□□□□ 0.11
CLK3-210ENST00000563112 C7orf57Q8NEG2 295 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 OR7G3Q8NG95 312 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 TMEM125Q96AQ2 219 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 REPS1Q96D71 796 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 VMP1Q96GC9 406 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 SCMH1Q96GD3 660 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 FUT8Q9BYC5 575 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 ACTR8Q9H981 624 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 ADAP2Q9NPF8 381 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 CPSF2Q9P2I0 782 aaKnown RBP15.74■□□□□ 0.11
CLK3-210ENST00000563112 FBXW2Q9UKT8 454 aa15.74■□□□□ 0.11
CLK3-210ENST00000563112 NOTCH2Q04721 2471 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 CYR61O00622 381 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 KRT38O76015 456 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 NEURL1O76050 574 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 TGFB1P01137 390 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 ALDOAP04075 364 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 RBP1P09455 135 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 ATP5A1P25705 553 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 MST1P26927 711 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 TRHRP34981 398 aaPredicted RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 SSR2P43308 183 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 PIK3CGP48736 1102 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 HLCSP50747 726 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 RAP1GDS1P52306 607 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 HNRNPFP52597 415 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 PMP22Q01453 160 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 ALDH6A1Q02252 535 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 DDX39BQ13838 428 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 ELAVL1Q15717 326 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 MAPKAPK3Q16644 382 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 KHDRBS2Q5VWX1 349 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 LIPJQ5W064 366 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 GALNTL5Q7Z4T8 443 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 CLNKQ7Z7G1 428 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 FJX1Q86VR8 437 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 ACOT4Q8N9L9 421 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 TMEM52Q8NDY8 209 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 SLC44A1Q8WWI5 657 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 DAZLQ92904 295 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 CSF3RQ99062 836 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 HES7Q9BYE0 225 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 ALOXE3Q9BYJ1 711 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 PPIEQ9UNP9 301 aaKnown RBP15.73■□□□□ 0.11
CLK3-210ENST00000563112 PCDHGA11Q9Y5H2 935 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 CLCA3PQ9Y6N3 262 aa15.73■□□□□ 0.11
CLK3-210ENST00000563112 TRGV8A0A0C4DH27 118 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 KLK8O60259 260 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 SH3BGRLO75368 114 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 SLC25A12O75746 678 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 ZFAND5O76080 213 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 TNNI3P19429 210 aa15.72■□□□□ 0.11
CLK3-210ENST00000563112 HIST1H1TP22492 207 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms