RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TCF25Q9BQ70 676 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 CDCP1Q9H5V8 836 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 PCDHB16Q9NRJ7 776 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 REV1Q9UBZ9 1251 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 TMCC3Q9ULS5 477 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 PRELID3BQ9Y3B1 194 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 KLF2Q9Y5W3 355 aaPredicted RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 CSNK1G3Q9Y6M4 447 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 PIPSLA2A3N6 862 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SLC35F4A4IF30 521 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 INSIG1O15503 277 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SCELO95171 688 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MPC2O95563 127 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 BMP8BP34820 402 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ERVK-8P63133 956 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SMAD3P84022 425 aaKnown RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 OR4D1Q15615 310 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SLC14A2Q15849 920 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ZNF549Q6P9A3 640 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 TFAP2EQ6VUC0 442 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 CHMP1BQ7LBR1 199 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 BMP8AQ7Z5Y6 402 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 DNAJB7Q7Z6W7 309 aaPredicted RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 GPR149Q86SP6 731 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 GALNT10Q86SR1 603 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 EFHBQ8N7U6 833 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 FAM181AQ8N9Y4 354 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ZBED6CLQ96FA7 236 aaPredicted RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 PYURFQ96I23 114 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 KCNC2Q96PR1 638 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MIXL1Q9H2W2 232 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ACTL8Q9H568 366 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 CATSPERZQ9NTU4 200 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 KCNMB2Q9Y691 235 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 LAMA3Q16787 3333 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SCN8AQ9UQD0 1980 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SEC14L5O43304 696 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 CFDP00746 253 aaPredicted RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 ACSM4P0C7M7 580 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 G6PDP11413 515 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MTHFD2P13995 350 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 CR2P20023 1033 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ZP3P21754 424 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MAN2A2P49641 1150 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 RORCP51449 518 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 CLCN4P51793 760 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 GTDC1Q4AE62 458 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 C6orf136Q5SQH8 315 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 C10orf62Q5T681 223 aaPredicted RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 PLPP4Q5VZY2 271 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 OR2T5Q6IEZ7 315 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MRNIPQ6NTE8 343 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 GLT6D1Q7Z4J2 308 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 TMEM150AQ86TG1 271 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 RASGRP3Q8IV61 690 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 PM20D2Q8IYS1 436 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 OR2T29Q8NH02 315 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 RBP7Q96R05 134 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 HBEGFQ99075 208 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 MGLLQ99685 303 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 PITX2Q99697 317 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 SORBS1Q9BX66 1292 aaKnown RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 MAGIXQ9H6Y5 334 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 ZNF334Q9HCZ1 680 aaPredicted RBP12.74□□□□□ -0.37
CLK3-206ENST00000562078 ZFP64Q9NPA5 681 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 KCMF1Q9P0J7 381 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 IKZF3Q9UKT9 509 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 INSL5Q9Y5Q6 135 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 PIKFYVEQ9Y2I7 2098 aa12.74□□□□□ -0.37
CLK3-206ENST00000562078 LOC102723532A0A0G2JNH3 316 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 LINC01553A4QN01 128 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 PRSS44E7EML9 344 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 M0R129 80 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 GFRA2O00451 464 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 LILRB3O75022 631 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ZNF682O95780 498 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ADH1AP07327 375 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 MYOGP15173 224 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 F8A1P23610 371 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 MRPL19P49406 292 aaKnown RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 ZNF140P52738 457 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 SMSP52788 366 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 EPHB3P54753 998 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 OLR1P78380 273 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 ARF5P84085 180 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 CAMK2GQ13555 558 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 SPDYE7PQ495Y7 208 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 XKR7Q5GH72 579 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 C9orf50Q5SZB4 431 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 LCN1P1Q5VSP4 162 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 RAB44Q7Z6P3 723 aaPredicted RBP12.73□□□□□ -0.37
CLK3-206ENST00000562078 FAM124AQ86V42 546 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 GPR65Q8IYL9 337 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 CARNMT1Q8N4J0 409 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 LPCAT1Q8NF37 534 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 OR4L1Q8NH43 312 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 BTN2A2Q8WVV5 523 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 SORCS2Q96PQ0 1159 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 UBQLN2Q9UHD9 624 aa12.73□□□□□ -0.37
CLK3-206ENST00000562078 PCDHGC4Q9Y5F7 938 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms