RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CMTM5Q96DZ9 223 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 MAELQ96JY0 434 aaKnown RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 MAP3K3Q99759 626 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ZFYVE21Q9BQ24 234 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 MFRPQ9BY79 579 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ROGDIQ9GZN7 287 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ING2Q9H160 280 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 TNFRSF12AQ9NP84 129 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 FGF21Q9NSA1 209 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CUEDC1Q9NWM3 386 aaPredicted RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 IRAK4Q9NWZ3 460 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SEMA5BQ9P283 1151 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 PPT2Q9UMR5 302 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 G3BP2Q9UN86 482 aaKnown RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 RUVBL1Q9Y265 456 aaKnown RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 PCDHGA9Q9Y5G4 932 aaKnown RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 CAPN7Q9Y6W3 813 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 KCNE1BA0A087WTH5 132 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 GNG14A0A1W2PPG7 69 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 FEZF1A0PJY2 475 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 MAGEB17A8MXT2 336 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 FCHO1O14526 889 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 SRPX2O60687 465 aaPredicted RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 GUCY1B2O75343 617 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 ATP5HO75947 161 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 ZBTB11O95625 1053 aaPredicted RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 PRPS2P11908 318 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 MAGP20916 626 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 COL8A1P27658 744 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 SCTRP47872 440 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 HMGCS1Q01581 520 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 PWP1Q13610 501 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 INPP5JQ15735 1006 aaPredicted RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 GPR19Q15760 415 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 ZSCAN26Q16670 478 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 XKR7Q5GH72 579 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 TCHHL1Q5QJ38 904 aaPredicted RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 C6orf136Q5SQH8 315 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 ZNF425Q6IV72 752 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 OGFOD2Q6N063 350 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 LARP4Q71RC2 724 aaKnown RBP eCLIP11.18□□□□□ -0.62
LDLR-212ENST00000560467 MAVSQ7Z434 540 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 ASPGQ86U10 573 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 KMT5CQ86Y97 462 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 Q8NA96 180 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 WDR20Q8TBZ3 569 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 MR1Q95460 341 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 OR52B2Q96RD2 323 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 PRPF18Q99633 342 aaKnown RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 GPR87Q9BY21 358 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 TUBB1Q9H4B7 451 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 FANCEQ9HB96 536 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 SLC6A20Q9NP91 592 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 DMRT3Q9NQL9 472 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 FARSBQ9NSD9 589 aaKnown RBP11.18□□□□□ -0.62
LDLR-212ENST00000560467 TMEM45AQ9NWC5 275 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 KLK4Q9Y5K2 254 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 AP1M2Q9Y6Q5 423 aa11.18□□□□□ -0.62
LDLR-212ENST00000560467 OR2A25A4D2G3 310 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 SLC9B1P1A6NJY1 282 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PSMD12O00232 456 aaPredicted RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 HAT1O14929 419 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 LSM1O15116 133 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 ZSCAN9O15535 394 aaPredicted RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 NDUFS4O43181 175 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 HNRNPCL1O60812 293 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 CPNE3O75131 537 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 SEMA3DO95025 777 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 TGFB1P01137 390 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 EIF2S1P05198 315 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 ACPPP15309 386 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 CD22P20273 847 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PRPH2P23942 346 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PEBP1P30086 187 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 ATP4BP51164 291 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ARFIP1P53367 373 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 RPS13P62277 151 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 RPS15P62841 145 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 RPL38P63173 70 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 HSD11B2P80365 405 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ACY1Q03154 408 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 NDUFA9Q16795 377 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 EIF2S3LQ2VIR3 472 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 DEPDC1Q5TB30 811 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PRAMEF17Q5VTA0 474 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 KHDRBS2Q5VWX1 349 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 LCN10Q6JVE6 187 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 NIPAL1Q6NVV3 410 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 TRIM40Q6P9F5 258 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ABHD13Q7L211 337 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 TRIM73Q86UV7 250 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PAQR7Q86WK9 346 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.17□□□□□ -0.62
LDLR-212ENST00000560467 SLC38A9Q8NBW4 561 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ERP27Q96DN0 273 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 C3orf30Q96M34 536 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 PPM1MQ96MI6 270 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 FCRL4Q96PJ5 515 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 HBEGFQ99075 208 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 NRTNQ99748 197 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms