RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SOX8P57073 446 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 KCNAB2Q13303 367 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 ABRAXAS2Q15018 415 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 NUP210LQ5VU65 1888 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 NDUFAF7Q7L592 441 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 CUZD1Q86UP6 607 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 SCUBE1Q8IWY4 988 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 KIRREL3Q8IZU9 778 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 RNF175Q8N4F7 328 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 OR6Y1Q8NGX8 325 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 TUBB6Q9BUF5 446 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 MECRQ9BV79 373 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 ZNF717Q9BY31 904 aaPredicted RBP12.24□□□□□ -0.45
NEDD8-208ENST00000560427 RBCK1Q9BYM8 510 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 ZNF700Q9H0M5 742 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 KCNK9Q9NPC2 374 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 SLC12A4Q9UP95 1085 aa12.24□□□□□ -0.45
NEDD8-208ENST00000560427 PCDHGA9Q9Y5G4 932 aaKnown RBP12.24□□□□□ -0.45
NEDD8-208ENST00000560427 FAM208BQ5VWN6 2430 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CACNA1GO43497 2377 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 IGKV3D-11A0A0A0MRZ8 115 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 IGHV1-45A0A0A0MS14 117 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 NSG1A0A0A6YYJ2 146 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 TMEM120BA0PK00 339 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 ARHGAP10A1A4S6 786 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 RTCAO00442 366 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CYR61O00622 381 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 DNAJB6O75190 326 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CDC123O75794 336 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CHEK2O96017 543 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 FGF4P08620 206 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 ICAM2P13598 275 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 GRK2P25098 689 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 PPP2R1BP30154 601 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 TLX1P31314 330 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 BUD31P41223 144 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 MAGOHP61326 146 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 TNFRSF17Q02223 184 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 NSDHLQ15738 373 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 SPIN4Q56A73 249 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 SGO1Q5FBB7 561 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CPZQ66K79 652 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 MRM1Q6IN84 353 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CYP20A1Q6UW02 462 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 RIPOR1Q6ZS17 1223 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 CPEB2Q7Z5Q1 589 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 ANKRD37Q7Z713 158 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 GPR180Q86V85 440 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 HPS6Q86YV9 775 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 NUDCD3Q8IVD9 361 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 TMEM151BQ8IW70 566 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 METTL4Q8N3J2 472 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 GOLGA6L1Q8N7Z2 621 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 PPP1R14CQ8TAE6 165 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 MTFMTQ96DP5 389 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 METTL2AQ96IZ6 378 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 ACPTQ9BZG2 426 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 PRTFDC1Q9NRG1 225 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 FARSBQ9NSD9 589 aaKnown RBP12.23□□□□□ -0.45
NEDD8-208ENST00000560427 KCMF1Q9P0J7 381 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 VPS29Q9UBQ0 182 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 PCDHGB7Q9Y5F8 929 aa12.23□□□□□ -0.45
NEDD8-208ENST00000560427 TCRBV16S1A1N1A0A5B0 115 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TMEM114B3SHH9 223 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 NPIPB8E9PQR5 432 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 AZIN1O14977 448 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 B4GALT2O60909 372 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 CTNSO60931 367 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 GUCY1B2O75343 617 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 SH3BGRLO75368 114 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 SERPINE1P05121 402 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 ALPPP05187 535 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 FAM87AP0C7U9 286 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 NEFHP12036 1026 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 CPN2P22792 545 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 GSTM5P46439 218 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 EFNA3P52797 238 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TRA2BP62995 288 aaKnown RBP12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TBL3Q12788 808 aaKnown RBP12.22□□□□□ -0.45
NEDD8-208ENST00000560427 SLAMF1Q13291 335 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 BIKQ13323 160 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 PCOLCEQ15113 449 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TERF2Q15554 542 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 EXT1Q16394 746 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 ARL13AQ5H913 290 aaPredicted RBP12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TCHHL1Q5QJ38 904 aaPredicted RBP12.22□□□□□ -0.45
NEDD8-208ENST00000560427 IRAK1BP1Q5VVH5 260 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 PCSK4Q6UW60 755 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 COMMD6Q7Z4G1 85 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TRIM46Q7Z4K8 759 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 GALNT16Q8N428 558 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 FAM47BQ8NA70 645 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 C8orf44Q96CB5 159 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 PTCHD1Q96NR3 888 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 KCNA7Q96RP8 456 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 LPAR4Q99677 370 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 SH3GL2Q99962 352 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 MRPL1Q9BYD6 325 aaKnown RBP12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TRIM55Q9BYV6 548 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 ACBD3Q9H3P7 528 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms