RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 LRTM1Q9HBL6 345 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 PRDM7Q9NQW5 492 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 SLC22A11Q9NSA0 550 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 C1orf109Q9NX04 203 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 VTI1BQ9UEU0 232 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 ZDHHC2Q9UIJ5 367 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 MCM8Q9UJA3 840 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 DAPP1Q9UN19 280 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 FER1L5A0AVI2 2057 aa9.52□□□□□ -0.89
USP3-216ENST00000559873 MAP1BP46821 2468 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 A0A0A6YYD5 115 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 NPIPB8E9PQR5 432 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 PEX12O00623 359 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 EFSO43281 561 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 PCDH7O60245 1069 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 VPS4BO75351 444 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 BMP10O95393 424 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 KLK1P06870 262 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 NR2F6P10588 404 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 DDX5P17844 614 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 TIA1P31483 386 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP3-216ENST00000559873 LIM2P55344 173 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 HSD17B7P56937 341 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 TRA2BP62995 288 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 RPL38P63173 70 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 OCRLQ01968 901 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 TNFRSF17Q02223 184 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 KLC1Q07866 573 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 TBL3Q12788 808 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 MAD2L1Q13257 205 aaPredicted RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 SLAMF1Q13291 335 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 PDCD2Q16342 344 aaPredicted RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 UGT8Q16880 541 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 SYT16Q17RD7 645 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 VWA2Q5GFL6 755 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 XKR7Q5GH72 579 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 LCN10Q6JVE6 187 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 GALNT18Q6P9A2 607 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 SCIMPQ6UWF3 145 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 ZNF793Q6ZN11 406 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 QSOX2Q6ZRP7 698 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 MED25Q71SY5 747 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 UBE3DQ7Z6J8 389 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 GPR180Q86V85 440 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 WDR75Q8IWA0 830 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 LRRC34Q8IZ02 419 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 ZNF717Q9BY31 904 aaPredicted RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 RBCK1Q9BYM8 510 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 AKIRIN1Q9H9L7 192 aaPredicted RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 TNFRSF12AQ9NP84 129 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 SIRT5Q9NXA8 310 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 IL17BQ9UHF5 180 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 C3orf18Q9UK00 162 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 FBXW2Q9UKT8 454 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 MKL2Q9ULH7 1088 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 ZMIZ1Q9ULJ6 1067 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 WBP11Q9Y2W2 641 aaKnown RBP9.51□□□□□ -0.89
USP3-216ENST00000559873 MMACHCQ9Y4U1 282 aa9.51□□□□□ -0.89
USP3-216ENST00000559873 PTPRQQ9UMZ3 2332 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 CDC14CA4D256 554 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 IDSB3KWA1 339 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 HDAC3O15379 428 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PRMT3O60678 531 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 ALOX12BO75342 701 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 SEC22BO75396 215 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 EEDO75530 441 aaKnown RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 KLF7O75840 302 aaPredicted RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 B3GALT4O96024 378 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 FAM58BPP0C7Q3 252 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 LINC00032P0C843 101 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 C8orf89P0DMQ9 161 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 ACPPP15309 386 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 MMP11P24347 488 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 TPP2P29144 1249 aaPredicted RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 OTX2P32243 289 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 EMP2P54851 167 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 RPS18P62269 152 aaKnown RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 BTKQ06187 659 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 ZNF763Q0D2J5 394 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 CDC20Q12834 499 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 SLC13A2Q13183 592 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 RUNX2Q13950 521 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 COL9A2Q14055 689 aaPredicted RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 SSPNQ14714 243 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 IKBIPQ70UQ0 350 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PARP9Q8IXQ6 854 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PRSS58Q8IYP2 241 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 FAM9CQ8IZT9 166 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 FAM47BQ8NA70 645 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 THAP4Q8WY91 577 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 TUBGCP3Q96CW5 907 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 APIPQ96GX9 242 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 CNTNAP3BQ96NU0 1288 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 CATSPER2Q96P56 530 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 SORBS1Q9BX66 1292 aaKnown RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 CNTNAP3Q9BZ76 1288 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PRDM9Q9NQV7 894 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PRTFDC1Q9NRG1 225 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 MARCOQ9UEW3 520 aaPredicted RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 POLHQ9Y253 713 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms