RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 UBQLNLQ8IYU4 475 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 OR6F1Q8NGZ6 308 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 LIPHQ8WWY8 451 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 EVI5LQ96CN4 794 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 HDAC11Q96DB2 347 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 RBM18Q96H35 190 aaKnown RBP2.95□□□□□ -1.94
VPS13C-208ENST00000559119 EBF4Q9BQW3 602 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 NACAP1Q9BZK3 213 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 CCDC68Q9H2F9 335 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 CCNB3Q8WWL7 1395 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 CCDC88BA6NC98 1476 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 NCOA2Q15596 1464 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 SOGA1O94964 1423 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 SETD5Q9C0A6 1442 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 MLNRO43193 412 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 FRAT2O75474 233 aaPredicted RBP2.94□□□□□ -1.94
VPS13C-208ENST00000559119 PSMD10O75832 226 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 GDF1P27539 372 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 ALDH3B1P43353 468 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 DMTNQ08495 405 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 CNTN1Q12860 1018 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 ISXQ2M1V0 245 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 C9orf152Q5JTZ5 239 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 SLC22A18ASQ8N1D0 253 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 ZNF781Q8N8C0 355 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 POGLUT1Q8NBL1 392 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 CAMKVQ8NCB2 501 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 OR2L5Q8NG80 312 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 ZNF558Q96NG5 402 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 UBE2TQ9NPD8 197 aaPredicted RBP2.94□□□□□ -1.94
VPS13C-208ENST00000559119 MRGBPQ9NV56 204 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 FAM169AQ9Y6X4 670 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 RAB3GAP2Q9H2M9 1393 aa2.94□□□□□ -1.94
VPS13C-208ENST00000559119 CNTLNQ9NXG0 1405 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 MAP3K1Q13233 1512 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 ABCC8Q09428 1581 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS13C-208ENST00000559119 LETM1O95202 739 aaPredicted RBP2.93□□□□□ -1.94
VPS13C-208ENST00000559119 TNNT2P45379 298 aaPredicted RBP2.93□□□□□ -1.94
VPS13C-208ENST00000559119 CKAP4Q07065 602 aaKnown RBP2.93□□□□□ -1.94
VPS13C-208ENST00000559119 KIAA0040Q15053 153 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 PPA1Q15181 289 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 GPR141Q7Z602 305 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 NRARPQ7Z6K4 114 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 ANP32BQ92688 251 aaKnown RBP2.93□□□□□ -1.94
VPS13C-208ENST00000559119 TMOD3Q9NYL9 352 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 CCDC144AA2RUR9 1427 aa2.93□□□□□ -1.94
VPS13C-208ENST00000559119 BAZ1AQ9NRL2 1556 aaPredicted RBP2.92□□□□□ -1.94
VPS13C-208ENST00000559119 INSRP06213 1382 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 TMCO5BA8MYB1 307 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 RSPH10B2B2RC85 870 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 ANHXE9PGG2 379 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 NPIPA3F8WFD2 350 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 SLC33A1O00400 549 aaPredicted RBP2.92□□□□□ -1.94
VPS13C-208ENST00000559119 FGF19O95750 216 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 RSPH10BP0C881 870 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 EEF2P13639 858 aaKnown RBP2.92□□□□□ -1.94
VPS13C-208ENST00000559119 SLC1A3P43003 542 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 TNFRSF4P43489 277 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 RGS7P49802 495 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 PRKCEQ02156 737 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 CRY2Q49AN0 593 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 RFPL4BQ6ZWI9 263 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 ZNRF1Q8ND25 227 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 EXT2Q93063 718 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 NSMCE4AQ9NXX6 385 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 CLIC5Q9NZA1 410 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 BCCIPQ9P287 314 aaKnown RBP eCLIP2.92□□□□□ -1.94
VPS13C-208ENST00000559119 MORF4L1Q9UBU8 362 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 ABCG2Q9UNQ0 655 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 RUVBL2Q9Y230 463 aaKnown RBP2.92□□□□□ -1.94
VPS13C-208ENST00000559119 SCAPERQ9BY12 1400 aa2.92□□□□□ -1.94
VPS13C-208ENST00000559119 HEG1Q9ULI3 1381 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 DYNC1I1O14576 645 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 PRAF2O60831 178 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 PTMSP20962 102 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 PRKAR2BP31323 418 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 CAPZA2P47755 286 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 SLC25A1P53007 311 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 MFAP3P55082 362 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 WNT4P56705 351 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 BACE1P56817 501 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 SLC27A4Q6P1M0 643 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 SAMD12Q8N8I0 201 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 NFAM1Q8NET5 270 aaPredicted RBP2.91□□□□□ -1.94
VPS13C-208ENST00000559119 TBCKQ8TEA7 893 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 TRIM44Q96DX7 344 aaPredicted RBP2.91□□□□□ -1.94
VPS13C-208ENST00000559119 TRIM7Q9C029 511 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 MAF1Q9H063 256 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 FZD8Q9H461 694 aa2.91□□□□□ -1.94
VPS13C-208ENST00000559119 ERICH3Q5RHP9 1530 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 OR9G9P0C7N8 305 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 P0C879 139 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 PPP2R1AP30153 589 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 HMGCLP35914 325 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 STX17P56962 302 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 RASA2Q15283 850 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 C17orf58Q2M2W7 97 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 FAM174BQ3ZCQ3 159 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 ARMCX4Q5H9R4 360 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms