RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PRAMEF10O60809 474 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 RNGTTO60942 597 aaKnown RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 ADAM23O75077 832 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 INMTO95050 263 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 EML2O95834 649 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 VIPP01282 170 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 FPR1P21462 350 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 AK4P27144 223 aaPredicted RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 PHEXP78562 749 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CDK6Q00534 326 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 LRRC74AQ0VAA2 488 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 RPA4Q13156 261 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 DUSP7Q16829 419 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CEACAM20Q6UY09 585 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CCDC71Q8IV32 467 aaPredicted RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 ERI1Q8IV48 349 aaKnown RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 FRMD1Q8N878 549 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CCL4L1Q8NHW4 92 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 UBE2E3Q969T4 207 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CAMK1GQ96NX5 476 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 MS4A8Q9BY19 250 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 PHPT1Q9NRX4 125 aaPredicted RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 IRAK4Q9NWZ3 460 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 SPHK1Q9NYA1 384 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 ANGPTL1O95841 491 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 EGFP01133 1207 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 PCGF2P35227 344 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 IGFALSP35858 605 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 MAP2K4P45985 399 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CSNK1G2P78368 415 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 ZNF750Q32MQ0 723 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 UBE3DQ7Z6J8 389 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 PGBD3Q8N328 593 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 OXR1Q8N573 874 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 OR52N2Q8NGI0 321 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 OR2A1Q8NGT9 310 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 HDAC2Q92769 488 aaKnown RBP10.12□□□□□ -0.79
CUX1-217ENST00000558836 RDH12Q96NR8 316 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 FEVQ99581 238 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 AICDAQ9GZX7 198 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 FGF22Q9HCT0 170 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CLEC1BQ9P126 229 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 ERVK-18Q9QC07 812 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 CFAP54Q96N23 3096 aa10.12□□□□□ -0.79
CUX1-217ENST00000558836 A0A1W2PS29 197 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 FAM227AF5H4B4 570 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 M0R129 80 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 B4GALT2O60909 372 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ABCB7O75027 752 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ADH1BP00325 375 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DNTTP04053 509 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ZNF182P17025 639 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 ADPRHP54922 357 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ITGA1P56199 1179 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 RPS21P63220 83 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 EPS8Q12929 822 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DYNC1I2Q13409 638 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 ZNF776Q68DI1 518 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 CCDC81Q6ZN84 652 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 NUDT18Q6ZVK8 323 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 B3GNT8Q7Z7M8 397 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 FBXL6Q8N531 539 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 HORMAD2Q8N7B1 307 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR9Q2Q8NGE9 314 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR52E1Q8NGJ3 308 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 TEFMQ96QE5 360 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 RSPO3Q9BXY4 272 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 BTBD1Q9H0C5 482 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DZANK1Q9NVP4 752 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DENND4AQ7Z401 1863 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 hCG_2014768A0A024R1R8 64 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 C4orf51C9J302 202 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 TNFRSF11BO00300 401 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 SLC16A6O15403 523 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 RPN2P04844 631 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 BCHEP06276 602 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 HOXB2P14652 356 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DDCP20711 480 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 CD72P21854 359 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 PPIBP23284 216 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 CCR3P51677 355 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 PRKAG1P54619 331 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 RPP38P78345 283 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 SPIBQ01892 262 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 TP53BP2Q13625 1128 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 SPDYE7PQ495Y7 208 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 RBM48Q5RL73 367 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 TPRG1LQ5T0D9 272 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 TRIM40Q6P9F5 258 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 IL17RCQ8NAC3 791 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 GOT1L1Q8NHS2 421 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 CXorf40BQ96DE9 158 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 NODALQ96S42 347 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 CSF3RQ99062 836 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 YIPF4Q9BSR8 244 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 AHSPQ9NZD4 102 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 CORO2BQ9UQ03 480 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 CAPN5O15484 640 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 NDUFS4O43181 175 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 KLF8O95600 359 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms