RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TBCEQ15813 527 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 ZNF658BQ4V348 819 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 C10orf62Q5T681 223 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 PLPP4Q5VZY2 271 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 FAM71E1Q6IPT2 247 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 OR5AR1Q8NGP9 310 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 ZFYVE19Q96K21 471 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 BCL7BQ9BQE9 202 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 KLHL25Q9H0H3 589 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TM7SF3Q9NS93 570 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TBX21Q9UL17 535 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 ZNF197O14709 1029 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 PPM1DO15297 605 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 KDM1AO60341 852 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 GADD45GO95257 159 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 RHOP08100 348 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 CKMT1AP12532 417 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 CHMP24386 653 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 GRK3P35626 688 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 XCR1P46094 333 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 NKX2-5P52952 324 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 DPPA4Q7L190 304 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 HEATR4Q86WZ0 1026 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 ADGRF3Q8IZF5 1079 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 POC5Q8NA72 575 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 MYDGFQ969H8 173 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 NXPE3Q969Y0 559 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 EHD1Q9H4M9 534 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 FKBP14Q9NWM8 211 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 IFT52Q9Y366 437 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 FEZF1A0PJY2 475 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 AGAP5A6NIR3 686 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 TPST2O60704 377 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 B4GALT2O60909 372 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 KCNK2O95069 426 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 PPIBP23284 216 aaKnown RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 PSMB5P28074 263 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 TGM4P49221 684 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 SEC23BQ15437 767 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 RAET1GQ6H3X3 334 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 NCCRP1Q6ZVX7 275 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 SPATC1Q76KD6 591 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 LRRC56Q8IYG6 542 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 HORMAD2Q8N7B1 307 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 GOT1L1Q8NHS2 421 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 STARD8Q92502 1023 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 TIFAQ96CG3 184 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 MAGEB10Q96LZ2 347 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 F2RL3Q96RI0 385 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 PIP5K1AQ99755 562 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 KCNS3Q9BQ31 491 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 NMNAT1Q9HAN9 279 aaPredicted RBP12.3□□□□□ -0.44
LDLR-207ENST00000558013 CLEC2DQ9UHP7 191 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 CORO2BQ9UQ03 480 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 DYRK1BQ9Y463 629 aa12.3□□□□□ -0.44
LDLR-207ENST00000558013 CTDSP2O14595 271 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 UPK1BO75841 260 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 BCHEP06276 602 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 ANXA8P13928 327 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 NNMTP40261 264 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 TPTEP56180 551 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 TPRG1LQ5T0D9 272 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 NXPE4Q6UWF7 544 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 CEACAM20Q6UY09 585 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 MEX3DQ86XN8 651 aaKnown RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 PARP16Q8N5Y8 322 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 VANGL1Q8TAA9 524 aaPredicted RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 SLC5A11Q8WWX8 675 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 HHIPL1Q96JK4 782 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 MIEF1Q9NQG6 463 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 PAK6Q9NQU5 681 aaPredicted RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.29□□□□□ -0.44
LDLR-207ENST00000558013 POFUT2Q9Y2G5 429 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 TRANK1O15050 2925 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 WWP2O00308 870 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 DPM1O60762 260 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 POP7O75817 140 aaKnown RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 CHRM5P08912 532 aaPredicted RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 LINC00271P0C7V0 271 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 TMED10P49755 219 aaKnown RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 PDE7AQ13946 482 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 TSTQ16762 297 aaKnown RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 AGAP7PQ5VUJ5 663 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 NLRP8Q86W28 1048 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 KIAA1958Q8N8K9 716 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 OR9A1PQ8NGU1 263 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 SGPP1Q9BX95 441 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 PLCXD1Q9NUJ7 323 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 CUEDC1Q9NWM3 386 aaPredicted RBP12.29□□□□□ -0.44
LDLR-207ENST00000558013 C14orf119Q9NWQ9 140 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 POU2F3Q9UKI9 436 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 PLXNA2O75051 1894 aa12.29□□□□□ -0.44
LDLR-207ENST00000558013 ANKDD1BA6NHY2 528 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PRRT4C9JH25 899 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ZW10O43264 779 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SOX3P41225 446 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PIK3CBP42338 1070 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 LIMS1P48059 325 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ZNF33BQ06732 778 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 HSPB3Q12988 150 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms