RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 AURKCQ9UQB9 309 aa11.85□□□□□ -0.51
SHMT2-233ENST00000557529 ERVK-11Q9UQG0 969 aa11.85□□□□□ -0.51
SHMT2-233ENST00000557529 LRRC42Q9Y546 428 aa11.85□□□□□ -0.51
SHMT2-233ENST00000557529 ASB4Q9Y574 426 aa11.85□□□□□ -0.51
SHMT2-233ENST00000557529 SPAG17Q6Q759 2223 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 TXNDC9O14530 226 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 RETP07949 1114 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SMIM10L1P0DMW3 83 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 UQCRC2P22695 453 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 CERS1P27544 350 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SOX11P35716 441 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 FRKP42685 505 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 MANFP55145 182 aaKnown RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 PCBP4P57723 403 aaKnown RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 GAB1Q13480 694 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 MLC1Q15049 377 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 PRSS53Q2L4Q9 553 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 C6orf132Q5T0Z8 1188 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 WLSQ5T9L3 541 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 OGFRL1Q5TC84 451 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 IRGCQ6NXR0 463 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ZCCHC8Q6NZY4 707 aaKnown RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 MMP21Q8N119 569 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ARL10Q8N8L6 244 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 C19orf47Q8N9M1 422 aaKnown RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 PAPD5Q8NDF8 572 aaKnown RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ADCY4Q8NFM4 1077 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ZFP28Q8NHY6 868 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 NCLNQ969V3 563 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 FAM162AQ96A26 154 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SMIM10Q96HG1 83 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 TRAPPC9Q96Q05 1148 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SERINC2Q96SA4 455 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ELF4Q99607 663 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-233ENST00000557529 CCDC3Q9BQI4 270 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SLC35A5Q9BS91 424 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 UGT2B28Q9BY64 529 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 KLHL4Q9C0H6 718 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 EPB41L1Q9H4G0 881 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 C1GALT1Q9NS00 363 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 ZSCAN32Q9NX65 697 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 SNX11Q9Y5W9 270 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 CROCCQ5TZA2 2017 aa11.84□□□□□ -0.51
SHMT2-233ENST00000557529 TDRD6O60522 2096 aaKnown RBP11.83□□□□□ -0.51
SHMT2-233ENST00000557529 SNRNP200O75643 2136 aaKnown RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 LOC105369274A0A096LPK9 316 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 LOC102723532A0A0G2JNH3 316 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 A0A1W2PR48 441 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 TMEM221A6NGB7 291 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 M0R296 226 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 P2RX6O15547 441 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 NUDT21O43809 227 aaKnown RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 B3GALT2O43825 422 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 CREG1O75629 220 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 KCNK5O95279 499 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ST6GAL1P15907 406 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ALOX12P18054 663 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 NTSP30990 170 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 CHI3L1P36222 383 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PPP1CAP62136 330 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 VAC14Q08AM6 782 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 FADDQ13158 208 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 SLC14A1Q13336 389 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 RGNQ15493 299 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 VMACQ2NL98 169 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PLK5Q496M5 336 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 FAM98BQ52LJ0 330 aaKnown RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 FRMPD2BQ6IN97 320 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ERMP1Q7Z2K6 904 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ZNF438Q7Z4V0 828 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ZZZ3Q8IYH5 903 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 OR4N4Q8N0Y3 316 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 EID3Q8N140 333 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 LILRA2Q8N149 483 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 CSNK1A1LQ8N752 337 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 TMEM102Q8N9M5 508 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 OR52N2Q8NGI0 321 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ZCCHC10Q8TBK6 192 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 EXOSC8Q96B26 276 aaKnown RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PPWD1Q96BP3 646 aaKnown RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 TCTN2Q96GX1 697 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 NECAB3Q96P71 396 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 CD180Q99467 661 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ZNF184Q99676 751 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-233ENST00000557529 RAB33BQ9H082 229 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 YY1AP1Q9H869 796 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 SLC35C2Q9NQQ7 365 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PRDM9Q9NQV7 894 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 GIMAP4Q9NUV9 329 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 OLAHQ9NV23 265 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 MS4A12Q9NXJ0 267 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 EPHA6Q9UF33 1036 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PILRBQ9UKJ0 227 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 UTS2RQ9UKP6 389 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 FBXO4Q9UKT5 387 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 FBXW2Q9UKT8 454 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 PSME2Q9UL46 239 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 ATG4BQ9Y4P1 393 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 KNL1Q8NG31 2342 aa11.83□□□□□ -0.52
SHMT2-233ENST00000557529 TLCD2A6NGC4 264 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms