RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PRPF38B	Q5VTL8	546 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPR149	Q86SP6	731 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	LHFPL3	Q86UP9	236 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FUNDC1	Q8IVP5	155 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPR150	Q8NGU9	434 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FEV	Q99581	238 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SORBS1	Q9BX66	1292 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	LGR4	Q9BXB1	951 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HDHD5	Q9BXW7	423 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC2A11	Q9BYW1	496 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAF1	Q9H063	256 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SYNDIG1	Q9H7V2	258 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	AKIP1	Q9NQ31	210 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PRKAG2	Q9UGJ0	569 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IGKV6-21	A0A0C4DH24	114 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR2A25	A4D2G3	310 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	WWP2	O00308	870 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GJB5	O95377	273 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	JUNB	P17275	347 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	LHCGR	P22888	699 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	KEL	P23276	732 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GRPR	P30550	384 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAU	P35544	74 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF140	P52738	457 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	NFATC2	Q13469	925 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TAF13	Q15543	124 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FLYWCH1	Q4VC44	716 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM171B	Q6P995	826 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	DHRS4L2	Q6PKH6	230 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM179B	Q7Z7N9	219 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TSPYL5	Q86VY4	417 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	OOSP2	Q86WS3	158 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC22A15	Q8IZD6	547 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM109A	Q8N4B1	249 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MOSPD2	Q8NHP6	518 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	LKAAEAR1	Q8TD35	194 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	DNAJA4	Q8WW22	397 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HMGB4	Q8WW32	186 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SOCS4	Q8WXH5	440 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SNAPC3	Q92966	411 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FKBP10	Q96AY3	582 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MRPL9	Q9BYD2	267 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ACPT	Q9BZG2	426 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLCO3A1	Q9UIG8	710 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HCN2	Q9UL51	889 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAB21L2	Q9Y586	359 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	NME7	Q9Y5B8	376 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FER1L6	Q2WGJ9	1857 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDK5RAP2	Q96SN8	1893 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	C2orf92	A0A1B0GVN3	265 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	C2orf78	A6NCI8	922 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	GLOD5	A6NK44	160 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAAH	O00519	579 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	LYRM1	O43325	122 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ICMT	O60725	284 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPP14	O95059	124 aa	Known RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SNAI1	O95863	264 aa	Predicted RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	LAMP1	P11279	417 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TGM4	P49221	684 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	FNTB	P49356	437 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPS25	P62851	125 aa	Known RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RBBP4	Q09028	425 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ELAVL2	Q12926	359 aa	Known RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SGCG	Q13326	291 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	DSG2	Q14126	1118 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	GINS1	Q14691	196 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	DPY19L1	Q2PZI1	675 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	CCDC157	Q569K6	752 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	WDR45B	Q5MNZ6	344 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF438	Q7Z4V0	828 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	PHYKPL	Q8IUZ5	450 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	NEIL3	Q8TAT5	605 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ADAMTS15	Q8TE58	950 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM40	Q8WWA1	233 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RIPOR3	Q96MK2	946 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	REEP4	Q9H6H4	257 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	AKAP7	Q9P0M2	348 aa	Predicted RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ABCD2	Q9UBJ2	740 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM98	Q9Y2Y6	226 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RWDD3	Q9Y3V2	267 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1B0GVC2	190 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	KDM4F	A0A1W2PPD8	638 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1W2PQ09	198 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005		A6NIN4	97 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	MEIS3P2	A8K0S8	358 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SYN3	O14994	580 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	B3GALT4	O96024	378 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ADORA3	P0DMS8	318 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF3	P17036	446 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	AMD1	P17707	334 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	DDX6	P26196	483 aa	Known RBP eCLIP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TNFSF8	P32971	234 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	LIPA	P38571	399 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARL4D	P49703	201 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	CRISP3	P54108	245 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDH11	P55287	796 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	AP1S1	P61966	158 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SP140	Q13342	867 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	PTGES3	Q15185	160 aa	Known RBP	4.78	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms