RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 STXBP1P61764 594 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 TBL3Q12788 808 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 ZC3H12BQ5HYM0 836 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 GALNT18Q6P9A2 607 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 VN1R5Q7Z5H4 357 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 SNX32Q86XE0 403 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 PLXDC1Q8IUK5 500 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 METTL4Q8N3J2 472 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 LIX1Q8N485 282 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 RNF175Q8N4F7 328 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 C1orf52Q8N6N3 182 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 IL22RA1Q8N6P7 574 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 Q8N9G6 341 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 TEX19Q8NA77 164 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 GLB1L3Q8NCI6 653 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 RERGQ96A58 199 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 RGMAQ96B86 450 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 ZFYVE21Q9BQ24 234 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 DPY30Q9C005 99 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 OR51B5Q9H339 312 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 LRRN3Q9H3W5 708 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 NDE1Q9NXR1 346 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 CCDC167Q9P0B6 97 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 FBN3Q75N90 2809 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ARHGEF17Q96PE2 2063 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 IGHV1OR21-1A0A087WYE8 117 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ARHGAP10A1A4S6 786 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 FAM234BA2RU67 622 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 TLCD2A6NGC4 264 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 URADA6NGE7 173 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 STMND1H3BQB6 276 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 CAPN5O15484 640 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 NDUFS4O43181 175 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 PCDH7O60245 1069 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 LCMT2O60294 686 aaKnown RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 T-ENOLP0DO92 83 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 CCL4P13236 92 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 JAK1P23458 1154 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 TIA1P31483 386 aaKnown RBP eCLIP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 GSTM5P46439 218 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 MXRA7P84157 204 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ZFP36L1Q07352 338 aaKnown RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 PWP1Q13610 501 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ZIC1Q15915 447 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 DEFB109BQ30KR1 87 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 MMEL1Q495T6 779 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 FCRL6Q6DN72 434 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ADNP2Q6IQ32 1131 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ASPGQ86U10 573 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 PLD3Q8IV08 490 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 C19orf47Q8N9M1 422 aaKnown RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 CAMKVQ8NCB2 501 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 GALNT11Q8NCW6 608 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 NT5CQ8TCD5 201 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 CREB3L4Q8TEY5 395 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 NCSTNQ92542 709 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 TCTN2Q96GX1 697 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 MRPL1Q9BYD6 325 aaKnown RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 NLNQ9BYT8 704 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 ADAM29Q9UKF5 820 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 KLHL20Q9Y2M5 609 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 WBP11Q9Y2W2 641 aaKnown RBP13.73□□□□□ -0.21
SHMT2-208ENST00000553868 SHANK1Q9Y566 2161 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 PCNX1Q96RV3 2341 aa13.73□□□□□ -0.21
SHMT2-208ENST00000553868 LOC100653049A0A140TA62 436 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 GNG14A0A1W2PPG7 69 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 NR5A2O00482 541 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 TXNDC9O14530 226 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 KRT34O76011 436 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 ETHE1O95571 254 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 ANXA4P09525 319 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 DDX5P17844 614 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 SDC1P18827 310 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 PRPS1L1P21108 318 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 CD82P27701 267 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 PTPN4P29074 926 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 RPL3P39023 403 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 TSFMP43897 325 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 POLR2JP52435 117 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 HNRNPH2P55795 449 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 NME5P56597 212 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 CLDN8P56748 225 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 OR1D5P58170 312 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 C16orf72Q14CZ0 275 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 EIF2S3LQ2VIR3 472 aaKnown RBP13.72□□□□□ -0.21
SHMT2-208ENST00000553868 ATP1A1-AS1Q5TC04 95 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 PAOXQ6QHF9 649 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 RNF44Q7L0R7 432 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 COMMD6Q7Z4G1 85 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 NUDT13Q86X67 352 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 POU5F2Q8N7G0 328 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 PCYOX1LQ8NBM8 494 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 SLC13A3Q8WWT9 602 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 KLHL29Q96CT2 875 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 TGM7Q96PF1 710 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 TRAPPC9Q96Q05 1148 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 CMKLR1Q99788 373 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 DPYSL5Q9BPU6 564 aa13.72□□□□□ -0.21
SHMT2-208ENST00000553868 ROGDIQ9GZN7 287 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms