RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 EFCAB10A6NFE3 127 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SAP18O00422 153 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SOCS5O75159 536 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CSO75390 466 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 UGT2B17O75795 530 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLITRK5O94991 958 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SOX14O95416 240 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CLEC2LP0C7M8 214 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 OR56A5P0C7T3 313 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 IL7P13232 177 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CD72P21854 359 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 LORP23490 312 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 POU1F1P28069 291 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 FLT3LGP49771 235 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 LIM2P55344 173 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 RPS13P62277 151 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 FKBP1BP68106 108 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 HOXC5Q00444 222 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 HYAL2Q12891 473 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 LMAN2Q12907 356 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PUM1Q14671 1186 aaKnown RBP eCLIP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SUZ12Q15022 739 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 DUSP7Q16829 419 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLC5A12Q1EHB4 618 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PUS10Q3MIT2 529 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 TBRG1Q3YBR2 411 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 FLYWCH1Q4VC44 716 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SNAP47Q5SQN1 464 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MFSD14CQ5VZR4 134 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 LIPJQ5W064 366 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 FRMPD2BQ6IN97 320 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLC8B1Q6J4K2 584 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF517Q6ZMY9 492 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 TPRG1Q6ZUI0 275 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PTCHD4Q6ZW05 846 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 VN1R5Q7Z5H4 357 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CAMKMTQ7Z624 323 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ABI3BPQ7Z7G0 1075 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 RNF130Q86XS8 419 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MMP21Q8N119 569 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 C2orf69Q8N8R5 385 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 GALNT6Q8NCL4 622 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ST13P5Q8NFI4 369 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 OR7G3Q8NG95 312 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 HUS1BQ8NHY5 278 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SCRN2Q96FV2 425 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MED8Q96G25 268 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 METTL2AQ96IZ6 378 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CEP19Q96LK0 163 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 WFDC6Q9BQY6 131 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLC35A5Q9BS91 424 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 BEX2Q9BXY8 128 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MIXL1Q9H2W2 232 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 NMNAT1Q9HAN9 279 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 C3orf14Q9HBI5 128 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SGK2Q9HBY8 427 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLC25A19Q9HC21 320 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 C11orf16Q9NQ32 467 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SNTG1Q9NSN8 517 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ABCB8Q9NUT2 735 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CNOT2Q9NZN8 540 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 DNAJC27Q9NZQ0 273 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SH2B3Q9UQQ2 575 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 HCN4Q9Y3Q4 1203 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MAP4K5Q9Y4K4 846 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PCDHGB2Q9Y5G2 931 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SMIM30A4D0T7 59 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 OR2AG2A6NM03 316 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 H0YIV9 168 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 H7C4K7 107 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 RFXAPO00287 272 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PLD2O14939 933 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SLC16A5O15375 505 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 UGDHO60701 494 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CCNB2O95067 398 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CYP17A1P05093 508 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SCG5P05408 212 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CHRM5P08912 532 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MPC1LP0DKB6 136 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ATP1B2P14415 290 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PRKCAP17252 672 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 DDOSTP39656 456 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 BDKRB1P46663 353 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CSNK1DP48730 415 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 HMGA2P52926 109 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CRISP1P54107 249 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PCBP3P57721 371 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CDC42P60953 191 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 PSPHP78330 225 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 GALK2Q01415 458 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MXD1Q05195 221 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CRHR2Q13324 411 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ELOAQ14241 798 aaKnown RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 CDK10Q15131 360 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SEC23BQ15437 767 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 FAM214AQ32MH5 1076 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 ZFP69Q49AA0 526 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MPPE1Q53F39 396 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms