RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 TUBGCP3Q96CW5 907 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CCNL2Q96S94 520 aaPredicted RBP13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 MAPKAP1Q9BPZ7 522 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 FAM117AQ9C073 453 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TGIF2Q9GZN2 237 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 LYRM4Q9HD34 91 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 C1orf109Q9NX04 203 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 LYARQ9NX58 379 aaKnown RBP13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 IL17BQ9UHF5 180 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 MKL2Q9ULH7 1088 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PCDHGA6Q9Y5G7 932 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 NUP210LQ5VU65 1888 aa13.67□□□□□ -0.22
TNFRSF1A-216ENST00000543995 GNG14A0A1W2PPG7 69 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 VSTM2BA6NLU5 285 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TCP11X1B4DZS4 312 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TAF4O00268 1085 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 LSM1O15116 133 aaKnown RBP13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PCDH7O60245 1069 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 B4GALT2O60909 372 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 JRKO75564 520 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 JUNP05412 331 aaKnown RBP13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 FHP07954 510 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 FAM58BPP0C7Q3 252 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CPN2P22792 545 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 JAK1P23458 1154 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PRPH2P23942 346 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TPP2P29144 1249 aaPredicted RBP13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TIA1P31483 386 aaKnown RBP eCLIP13.66□□□□□ -0.223e-6■■■■□ 24.9
TNFRSF1A-216ENST00000543995 MDH1P40925 334 aaKnown RBP13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 HK2P52789 917 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 ATP6AP1LQ52LC2 224 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 XKR7Q5GH72 579 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 RGS9BPQ6ZS82 235 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 Q6ZSR9 355 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 GPR180Q86V85 440 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 FAM47BQ8NA70 645 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PPP3R2Q96LZ3 170 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 C3orf30Q96M34 536 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 OR1F2PQ96R84 312 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 SPSB2Q99619 263 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CRB3Q9BUF7 120 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 EBPLQ9BY08 206 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 MS4A12Q9NXJ0 267 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 VTI1BQ9UEU0 232 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PHF11Q9UIL8 331 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 MCM8Q9UJA3 840 aa13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 POLR3HQ9Y535 204 aaPredicted RBP13.66□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TRPC5OSA6NMA1 111 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 FAM227AF5H4B4 570 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 HDAC3O15379 428 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TMPRSS11DO60235 418 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 PEX11AO75192 247 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CREG1O75629 220 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 KLF7O75840 302 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 HEXBP07686 556 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 TLX1P31314 330 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 BUD31P41223 144 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 HNRNPH2P55795 449 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 RPL38P63173 70 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 LAPTM4BQ86VI4 370 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 WDR75Q8IWA0 830 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 KDF1Q8NAX2 398 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 ZSCAN1Q8NBB4 408 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 OR2Y1Q8NGV0 311 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 SLC45A3Q96JT2 553 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 CSF3RQ99062 836 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 KCMF1Q9P0J7 381 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 GIMAP2Q9UG22 337 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 C3orf18Q9UK00 162 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 MRPS33Q9Y291 106 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 ATG4BQ9Y4P1 393 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 ASPMQ8IZT6 3477 aa13.65□□□□□ -0.22
TNFRSF1A-216ENST00000543995 IDSB3KWA1 339 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 NPIPB8E9PQR5 432 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CLDN4O14493 209 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 GUCY1B2O75343 617 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ANXA4P09525 319 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 EMP2P54851 167 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 RAE1P78406 368 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 TNFRSF17Q02223 184 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 SSPNQ14714 243 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 TUBB8Q3ZCM7 444 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 RFTN2Q52LD8 501 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CCDC81Q6ZN84 652 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CDC26Q8NHZ8 85 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 METTL2AQ96IZ6 378 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 WDR41Q9HAD4 459 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 MEAF6Q9HAF1 191 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 LANCL2Q9NS86 450 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 TMED5Q9Y3A6 229 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ASB4Q9Y574 426 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 USH1CQ9Y6N9 552 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 OR2W5A6NFC9 320 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ZNF891A8MT65 544 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CYR61O00622 381 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 PROM1O43490 865 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 PRMT3O60678 531 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 VPS4BO75351 444 aa13.64□□□□□ -0.23
TNFRSF1A-216ENST00000543995 VIMP08670 466 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms