RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DRD2P14416 443 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 CNR1P21554 472 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 HNRNPH1P31943 449 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 HK2P52789 917 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 HSD17B7P56937 341 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 BTN3A2P78410 334 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 FOXO1Q12778 655 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 RBBP5Q15291 538 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 SLC25A35Q3KQZ1 300 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 NXPE4Q6UWF7 544 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 SBSNQ6UWP8 590 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 TMPRSS11BQ86T26 416 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 THOC6Q86W42 341 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 FAM109AQ8N4B1 249 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 SLCO2A1Q92959 643 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 RMND5BQ96G75 393 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 FAM173AQ9BQD7 235 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 AIF1LQ9BQI0 150 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 CNPPD1Q9BV87 410 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 HOMER3Q9NSC5 361 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 CRIM1Q9NZV1 1036 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 A0A1B0GTL3 188 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 SUSD5O60279 629 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 WDR1O75083 606 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 AHSGP02765 367 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 FOSL1P15407 271 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 ENDOUP21128 410 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 DNASE1P24855 282 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 CXCR5P32302 372 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 DNASE1L1P49184 302 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 IL2P60568 153 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 SLC13A2Q13183 592 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 CRYMQ14894 314 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 HYAL4Q2M3T9 481 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 C1orf185Q5T7R7 199 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 GK5Q6ZS86 529 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 CDC20BQ86Y33 519 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 ZNF321PQ8N8H1 164 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 ATL1Q8WXF7 558 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 GAL3ST3Q96A11 431 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 IL1RL2Q9HB29 575 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 SEMA4BQ9NPR2 832 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 SLC22A14Q9Y267 594 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 EXPH5Q8NEV8 1989 aa16.49■□□□□ 0.23
CLSTN3-214ENST00000542663 DOCK7Q96N67 2140 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 ENO2P09104 434 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 CCDC175P0C221 793 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 KIR2DL3P43628 341 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 RAB38P57729 211 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 CCZ1BP86790 482 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 CCZ1P86791 482 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 ELAVL1Q15717 326 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 PPP1R3AQ16821 1122 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 RTL4Q6ZR62 310 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 WDR53Q7Z5U6 358 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 CLNKQ7Z7G1 428 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 NAT8LQ8N9F0 302 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 FAM47BQ8NA70 645 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 PTPMT1Q8WUK0 201 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 MS4A6EQ96DS6 147 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 QRFPRQ96P65 431 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 CSF3RQ99062 836 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 NPLQ9BXD5 320 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 TRIM54Q9BYV2 358 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 RBSNQ9H1K0 784 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 TUBA8Q9NY65 449 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 SLC17A6Q9P2U8 582 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 SPRR3Q9UBC9 169 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 ACAD8Q9UKU7 415 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 DYRK1BQ9Y463 629 aa16.48■□□□□ 0.23
CLSTN3-214ENST00000542663 MYOCOSA0A1B0GUC4 107 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 ATP6AP2A0A1C7CYW4 349 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 PABPN1LA6NDY0 278 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 A6NNC1 897 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 CYR61O00622 381 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 CLDN4O14493 209 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 ERI3O43414 337 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 ATP6AP2O75787 350 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 TBX6O95947 436 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 CCL3P10147 92 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 SAT1P21673 171 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 MAN2A2P49641 1150 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 PDAP1Q13442 181 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 BMPR2Q13873 1038 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 BBS9Q3SYG4 887 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 RIPPLY2Q5TAB7 128 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 HSDL2Q6YN16 418 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 FAM47EQ6ZV65 393 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 CNTN4Q8IWV2 1026 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 TMEM132CQ8N3T6 1108 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 GOLM1Q8NBJ4 401 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 RELL2Q8NC24 303 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 MBD6Q96DN6 1003 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 FAR2Q96K12 515 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 DMRT3Q9NQL9 472 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 ATG4BQ9Y4P1 393 aa16.47■□□□□ 0.23
CLSTN3-214ENST00000542663 LRIT2A6NDA9 550 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 NRDCO43847 1150 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 BANF1O75531 89 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms