RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SLC30A8Q8IWU4 369 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NFKBIDQ8NI38 313 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 RGMAQ96B86 450 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NEURL3Q96EH8 262 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 SARGQ9BW04 601 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 SLC6A17Q9H1V8 727 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 REEP1Q9H902 201 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NDUFAF4Q9P032 175 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 PDP1Q9P0J1 537 aaPredicted RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 BAG5Q9UL15 447 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NDRG4Q9ULP0 352 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 KCNK6Q9Y257 313 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 SAMHD1Q9Y3Z3 626 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 TRBC2A0A5B9 178 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 TMEM221A6NGB7 291 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 PRAMEF25A6NGN4 478 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 RTCAO00442 366 aaKnown RBP13.12□□□□□ -0.31
RTN3-210ENST00000540798 SEC14L2O76054 403 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 DNTTP04053 509 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 DLX2Q07687 328 aaPredicted RBP13.12□□□□□ -0.31
RTN3-210ENST00000540798 HTR4Q13639 388 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 RAPSNQ13702 412 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 LAPTM4AQ15012 233 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 UAP1L1Q3KQV9 507 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 NUDT13Q86X67 352 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 CLVS1Q8IUQ0 354 aaPredicted RBP13.12□□□□□ -0.31
RTN3-210ENST00000540798 PSMA8Q8TAA3 256 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 PITX2Q99697 317 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 EBF1Q9UH73 591 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 SCML1Q9UN30 329 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 A0A0A6YYD5 115 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 MYO1GB0I1T2 1018 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 SLC1A7O00341 560 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 LATO43561 262 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 TMPRSS11DO60235 418 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 CCDC159P0C7I6 412 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 AQP1P29972 269 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 CDK6Q00534 326 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 CDK5R2Q13319 367 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 HEPACAMQ14CZ8 416 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 MLC1Q15049 377 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 GTF2IRD2BQ6EKJ0 949 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 GTF2IRD2Q86UP8 949 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 SPARTQ8N0X7 666 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 OR4C15Q8NGM1 316 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 OR5AK3PQ8NH89 298 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 RIPOR3Q96MK2 946 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 TMEM121BQ9BXQ6 578 aaPredicted RBP13.12□□□□□ -0.31
RTN3-210ENST00000540798 TAS2R7Q9NYW3 318 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 CDC14AQ9UNH5 594 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 PCDHGB3Q9Y5G1 929 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 XIRP2A4UGR9 3374 aa13.12□□□□□ -0.31
RTN3-210ENST00000540798 AGXTP21549 392 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 CHI3L1P36222 383 aaPredicted RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 TUBA3CQ13748 450 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 SETD9Q8NE22 299 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 TTLQ8NG68 377 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 OR52E1Q8NGJ3 308 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 C12orf43Q96C57 262 aaKnown RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 CENPOQ9BU64 300 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 GABARAPL3Q9BY60 117 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ABCG4Q9H172 646 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 OSGEPL1Q9H4B0 414 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 INIPQ9NRY2 104 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 SIRT3Q9NTG7 399 aaPredicted RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 MAP4K5Q9Y4K4 846 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 LYVE1Q9Y5Y7 322 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 OR1F1O43749 312 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 EGFP01133 1207 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 JUNDP17535 347 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 CTHP32929 405 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PXNP49023 591 aaPredicted RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 CASP9P55211 416 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 KIAA1024LP59773 190 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 HYAL2Q12891 473 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ADPRMQ3LIE5 342 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 IFI44LQ53G44 452 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 GALNT5Q7Z7M9 940 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 SGCDQ92629 289 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PDXPQ96GD0 296 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ZNF347Q96SE7 839 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 SLC6A20Q9NP91 592 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 A4GALTQ9NPC4 353 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 IMP3Q9NV31 184 aaKnown RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 PAK1IP1Q9NWT1 392 aaPredicted RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 LRIT2A6NDA9 550 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 BOLA2-SMG1P6H3BVE0 249 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PDPK1O15530 556 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 DDX5P17844 614 aaKnown RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 PEBP1P30086 187 aaKnown RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 ARFIP1P53367 373 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 CXCR4P61073 352 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PPP2CBP62714 309 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PPP2CAP67775 309 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 RPE65Q16518 533 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 TMEM35AQ53FP2 167 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 OR4C11Q6IEV9 310 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 SDE2Q6IQ49 451 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 DHRS4L2Q6PKH6 230 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ANGPTL8Q6UXH0 198 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms