RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PCDHGB1Q9Y5G3 927 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ZCWPW2A0A1B0GU75 182 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 EDIL3O43854 480 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CSTAP01040 98 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 HOXD9P28356 352 aaPredicted RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 IL12AP29459 219 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ACY1Q03154 408 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CHCHD4Q8N4Q1 142 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 MDGA1Q8NFP4 955 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ZFYVE21Q9BQ24 234 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 PREBQ9HCU5 417 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 STOX2Q9P2F5 926 aaPredicted RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 B4GALT7Q9UBV7 327 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 PLCL2Q9UPR0 1127 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 MAU2Q9Y6X3 613 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TAF4O00268 1085 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CH25HO95992 272 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 FPR1P21462 350 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ITGA3P26006 1051 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 OTX2P32243 289 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 MERTKQ12866 999 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TRAM2Q15035 370 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TMEM107Q6UX40 140 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 RASSF6Q6ZTQ3 369 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 POLR2J2Q9GZM3 115 aaKnown RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 TMEM5Q9Y2B1 443 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 A0A096LPI6 279 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 FAM25EA8MYX2 175 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CBX5P45973 191 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CSNK1DP48730 415 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ARSFP54793 590 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CDK3Q00526 305 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 LRP8Q14114 963 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ELOAQ14241 798 aaKnown RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 ADNP2Q6IQ32 1131 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TRIM73Q86UV7 250 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 ARFGAP1Q8N6T3 406 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 PJA1Q8NG27 643 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 OR52B6Q8NGF0 335 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TSPEARQ8WU66 669 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 FUBP1Q96AE4 644 aaKnown RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 FBXL8Q96CD0 374 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 CLCC1Q96S66 551 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 NLGN3Q9NZ94 848 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 PPP4R1LQ9P1A2 415 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 TNFRSF10DQ9UBN6 386 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 OR52A4PA6NMU1 304 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PDCD5O14737 125 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PON3Q15166 354 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 IRF4Q15306 451 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 C18orf21Q32NC0 220 aaPredicted RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 PNCKQ6P2M8 343 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 CDHR3Q6ZTQ4 885 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 CLIP4Q8N3C7 705 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 OR2L5Q8NG80 312 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 FAR1Q8WVX9 515 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 NKD1Q969G9 470 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 RBP7Q96R05 134 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 TSSK6Q9BXA6 273 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PCDHGB5Q9Y5G0 923 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 ENTPD2Q9Y5L3 495 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 A0A1W2PRG6 482 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 H3BNX3 289 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 TNFRSF21O75509 655 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 ENDOUP21128 410 aaKnown RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 IL4RP24394 825 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 MAP3K8P41279 467 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 SHC2P98077 582 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 NSDHLQ15738 373 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 DCP2Q8IU60 420 aaKnown RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 OR4N5Q8IXE1 308 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 SLC22A8Q8TCC7 542 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 TMCO6Q96DC7 493 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 MAPKAP1Q9BPZ7 522 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 MKS1Q9NXB0 559 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 RHCGQ9UBD6 479 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 A0A1W2PQ72 361 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PDLIM1O00151 329 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 KIAA0355O15063 1070 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 DFNA5O60443 496 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 DBIP07108 87 aaKnown RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 ETS2P15036 469 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 SLC6A6P31641 620 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 FAM189BP81408 668 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 TDGQ13569 410 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 SPATS1Q496A3 300 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 MEAF6Q9HAF1 191 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PELI2Q9HAT8 420 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 NKIRAS2Q9NYR9 191 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 PTGDR2Q9Y5Y4 395 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 RNF13O43567 381 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 CBLP22681 906 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 NR4A1P22736 598 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 EIF2B2P49770 351 aaKnown RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 SIM1P81133 766 aaPredicted RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 COL9A2Q14055 689 aaPredicted RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 SETD6Q8TBK2 473 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 MOCOSQ96EN8 888 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 AURKBQ96GD4 344 aaPredicted RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 WDR12Q9GZL7 423 aaKnown RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms