RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RELL2Q8NC24 303 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 TRPV3Q8NET8 790 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 OR56A3Q8NH54 315 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 EEF1AKMT1Q8WVE0 214 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 PYCR2Q96C36 320 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 SCYL1Q96KG9 808 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 HIST1H2AHQ96KK5 128 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 SGCZQ96LD1 299 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 HIST1H2AJQ99878 128 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 AARSD1Q9BTE6 412 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 H2AFJQ9BTM1 129 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 KLHL31Q9H511 634 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 EXO5Q9H790 373 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 SACM1LQ9NTJ5 587 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 BEX4Q9NWD9 120 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 CLDN16Q9Y5I7 305 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 CSPG4Q6UVK1 2322 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 MPDZO75970 2070 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 COL6A5A8TX70 2615 aa10.76□□□□□ -0.69
CLSTN3-209ENST00000539982 MAGEB16A2A368 324 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 CLDN4O14493 209 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 TPSB2P20231 275 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 ENDOUP21128 410 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 BMP5P22003 454 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 TACR1P25103 407 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 DNASE1L1P49184 302 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 RGS4P49798 205 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 DCAF7P61962 342 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 TPSAB1Q15661 275 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 CCNG2Q16589 344 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 UGT3A1Q6NUS8 523 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 CASC4Q6P4E1 433 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 CXXC5Q7LFL8 322 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 KIF18BQ86Y91 864 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 TMEM132CQ8N3T6 1108 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 FBXW8Q8N3Y1 598 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 ANKRD53Q8N9V6 530 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 NANOS1Q8WY41 292 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 OR4K3Q96R72 315 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 SPNS1Q9H2V7 528 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 ADAP2Q9NPF8 381 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 SEMA4BQ9NPR2 832 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 PRTFDC1Q9NRG1 225 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 TUBA8Q9NY65 449 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 SPRR3Q9UBC9 169 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF629Q9UEG4 869 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 MTRF1LQ9UGC7 380 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 EML6Q6ZMW3 1958 aa10.75□□□□□ -0.69
CLSTN3-209ENST00000539982 ARHGAP21Q5T5U3 1957 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 TCRBV7S3A2A0A539 114 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 CTAGE15A4D2H0 777 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 SYNDIG1LA6NDD5 238 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 AHRRA9YTQ3 701 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 TGFBR3LH3BV60 316 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 ARHGEF9O43307 516 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 HAUS5O94927 633 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 GOSR1O95249 250 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 EPPINO95925 133 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 P04436 131 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 SERPINA6P08185 405 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 CD53P19397 219 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 CEACAM8P31997 349 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 HK2P52789 917 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 BTN3A2P78410 334 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 SARNPP82979 210 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 DHX9Q08211 1270 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 SLC13A2Q13183 592 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 RUNX2Q13950 521 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 PCBP2Q15366 365 aaKnown RBP eCLIP10.74□□□□□ -0.699e-7■■■■□ 24.1
CLSTN3-209ENST00000539982 ELAVL1Q15717 326 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 PHKG1Q16816 387 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 DRICH1Q6PGQ1 229 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 POMZP3Q6PJE2 187 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 OPN5Q6U736 354 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 RAD9BQ6WBX8 426 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 GSTA5Q7RTV2 222 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 MAATS1Q7Z4T9 603 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 KIAA1328Q86T90 577 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 CTAGE6Q86UF2 777 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 LMNTD2Q8IXW0 634 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 ULK2Q8IYT8 1036 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 MYO1HQ8N1T3 1032 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 NAXEQ8NCW5 288 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 LRRN4CLQ8ND94 238 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 OR8K3Q8NH51 312 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 SLC5A11Q8WWX8 675 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 NEIL2Q969S2 332 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 NPLQ9BXD5 320 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 ARL15Q9NXU5 204 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 TRMT6Q9UJA5 497 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 ATG4BQ9Y4P1 393 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 CLCA3PQ9Y6N3 262 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 RTTNQ86VV8 2226 aa10.74□□□□□ -0.69
CLSTN3-209ENST00000539982 ZCWPW2A0A1B0GU75 182 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 C4orf51C9J302 202 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF354AO60765 605 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 CCL3P10147 92 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 PCSK6P29122 969 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TIMP3P35625 211 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 SLC1A2P43004 574 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms