RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PLXND1Q9Y4D7 1925 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 KCNK2O95069 426 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 GADD45GO95257 159 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 C1GALT1C1LP0DN25 315 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ARAFP10398 606 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 GTF2E2P29084 291 aaKnown RBP18.4■□□□□ 0.54
VPS28-213ENST00000530983 PRMT2P55345 433 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 OLR1P78380 273 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 DEFB103AP81534 67 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ZNF45Q02386 682 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 DOC2BQ14184 412 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 IRF7Q92985 503 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 OR5M11Q96RB7 305 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 LINC00597Q9H2U6 94 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 FTSJ1Q9UET6 329 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 KLK4Q9Y5K2 254 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ENPP4Q9Y6X5 453 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 KIF26AQ9ULI4 1882 aaPredicted RBP18.4■□□□□ 0.54
VPS28-213ENST00000530983 KIAA1549LQ6ZVL6 1849 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 CCNB2O95067 398 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 MMP12P39900 470 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 NR4A2P43354 598 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 UGT2B15P54855 530 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 GRIN2CQ14957 1233 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 NDUFA5Q16718 116 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 LRIT3Q3SXY7 679 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 KLHL17Q6TDP4 642 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 LIPIQ6XZB0 460 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 AQP11Q8NBQ7 271 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 FBXO15Q8NCQ5 510 aaPredicted RBP18.4■□□□□ 0.54
VPS28-213ENST00000530983 SGPP1Q9BX95 441 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 CDCA4Q9BXL8 241 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ASAH2Q9NR71 780 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 RHCGQ9UBD6 479 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 RAB23Q9ULC3 237 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ITM2BQ9Y287 266 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 NINQ8N4C6 2090 aa18.4■□□□□ 0.54
VPS28-213ENST00000530983 ZAR1LA6NP61 321 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 KLK1P06870 262 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 ELFN1P0C7U0 828 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 SPNP16150 400 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 S100A5P33763 92 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 BMPR1AP36894 532 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 CDC42P60953 191 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 FOXD4Q12950 439 aaPredicted RBP18.39■□□□□ 0.53
VPS28-213ENST00000530983 STARD3Q14849 445 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 ZNF367Q7RTV3 350 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 MMP21Q8N119 569 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 CLIP4Q8N3C7 705 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 IL36AQ9UHA7 158 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 DYRK1BQ9Y463 629 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 LRRK1Q38SD2 2015 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 A0A1W2PRB8 838 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 TRBC2A0A5B9 178 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 PLK4O00444 970 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 MYCP01106 439 aaPredicted RBP18.39■□□□□ 0.53
VPS28-213ENST00000530983 GASTP01350 101 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 IFNA14P01570 189 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 DNTTP04053 509 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 XPAP23025 273 aaPredicted RBP18.39■□□□□ 0.53
VPS28-213ENST00000530983 CHMP24386 653 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 SOAT1P35610 550 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 RPL3P39023 403 aaKnown RBP18.39■□□□□ 0.53
VPS28-213ENST00000530983 DEFB115Q30KQ5 88 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 ZNF805Q5CZA5 627 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 LILRA6Q6PI73 481 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 C19orf48Q6RUI8 117 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 CYP4Z2PQ8N1L4 340 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 METTL4Q8N3J2 472 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 ZNF740Q8NDX6 193 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 CAPSLQ8WWF8 208 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 TCEAL4Q96EI5 215 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 MAPKAP1Q9BPZ7 522 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 ROGDIQ9GZN7 287 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 GPBP1L1Q9HC44 474 aaPredicted RBP18.39■□□□□ 0.53
VPS28-213ENST00000530983 SPHK2Q9NRA0 654 aa18.39■□□□□ 0.53
VPS28-213ENST00000530983 CCL16O15467 120 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 ZW10O43264 779 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 POLR2EP19388 210 aaKnown RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 DMC1Q14565 340 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 DUSP7Q16829 419 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 ZNF770Q6IQ21 691 aaPredicted RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 ATCAYQ86WG3 371 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 LRRC56Q8IYG6 542 aaPredicted RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 CFAP206Q8IYR0 622 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 C9orf43Q8TAL5 461 aaPredicted RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 ZBP1Q9H171 429 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 MIR1-1HGQ9H1L0 117 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 NMNAT1Q9HAN9 279 aaPredicted RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 ANGPT4Q9Y264 503 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 CAB39Q9Y376 341 aaPredicted RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 SH3D21A4FU49 640 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 EFCAB10A6NFE3 127 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 FAM227AF5H4B4 570 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 DLGAP3O95886 979 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 PTTG1O95997 202 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 IL3P08700 152 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 RHCEP18577 417 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 TAP2Q03519 686 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 PUM1Q14671 1186 aaKnown RBP eCLIP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms