RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PIK3CBP42338 1070 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 PKNOX1P55347 436 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 IFT88Q13099 833 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 PCLAFQ15004 111 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 TLR1Q15399 786 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 ZRSR2Q15696 482 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 B3GNTL1Q67FW5 361 aaPredicted RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 TTC19Q6DKK2 380 aaPredicted RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 IGFL2Q6UWQ7 119 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 GPRIN3Q6ZVF9 776 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 RPS27LQ71UM5 84 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 VN1R5Q7Z5H4 357 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 C10orf107Q8IVU9 208 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 AFAP1L2Q8N4X5 818 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 DTWD1Q8N5C7 304 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 SRFBP1Q8NEF9 429 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 OR4F6Q8NGB9 312 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 OR11G2Q8NGC1 345 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 OR9A4Q8NGU2 314 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 DNAJB14Q8TBM8 379 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 GRHL3Q8TE85 626 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 UTP15Q8TED0 518 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 ZNF473Q8WTR7 871 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 ZBTB9Q96C00 473 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 CMTM7Q96FZ5 175 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 FAR2Q96K12 515 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 CDK15Q96Q40 435 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 CENPKQ9BS16 269 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 YIPF2Q9BWQ6 316 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 MS4A8Q9BY19 250 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 REXO4Q9GZR2 422 aaKnown RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 ELOVL6Q9H5J4 265 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 COPS7BQ9H9Q2 264 aaPredicted RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 TMBIM4Q9HC24 238 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 MKKSQ9NPJ1 570 aaPredicted RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 C14orf105Q9NVL8 296 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 SLC17A7Q9P2U7 560 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 TRPC4Q9UBN4 977 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 RNF11Q9Y3C5 154 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 NAALAD2Q9Y3Q0 740 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 LRIT2A6NDA9 550 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 VSTM2BA6NLU5 285 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ENO4A6NNW6 628 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 SGK494L7N484 410 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ERI3O43414 337 aaKnown RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 GALR3O60755 368 aaPredicted RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 RDH16O75452 317 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ZWINTO95229 277 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HPP00738 406 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ENO1P06733 434 aaKnown RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 EDN3P14138 238 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 TSPAN8P19075 237 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HMOX2P30519 316 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HNRNPH1P31943 449 aaKnown RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 RAP1GDS1P52306 607 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 NAGLUP54802 743 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 PER3P56645 1201 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 RAB8AP61006 207 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 KLC1Q07866 573 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HYAL2Q12891 473 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 MFAP5Q13361 173 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ADPRMQ3LIE5 342 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 DEFB134Q4QY38 66 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 TMEM35AQ53FP2 167 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HSP90B2PQ58FF3 399 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 AGBL2Q5U5Z8 902 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 FRG2Q64ET8 278 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ADNP2Q6IQ32 1131 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 FAM180AQ6UWF9 173 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ISLR2Q6UXK2 745 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 LINC00696Q6ZRV3 163 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 FRMD7Q6ZUT3 714 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 CHSY3Q70JA7 882 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 PRSS41Q7RTY9 318 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 MTERF4Q7Z6M4 381 aaKnown RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 PRSS58Q8IYP2 241 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 AMER3Q8N944 861 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 OR2L5Q8NG80 312 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HUS1BQ8NHY5 278 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 STT3BQ8TCJ2 826 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 MIEF2Q96C03 454 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 MS4A6EQ96DS6 147 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 FRG2BQ96QU4 278 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 TRMOQ9BU70 441 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 ROGDIQ9GZN7 287 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 GSTO2Q9H4Y5 243 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 KLHL31Q9H511 634 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 CLK4Q9HAZ1 481 aaKnown RBP9.55□□□□□ -0.88
VPS28-204ENST00000526054 ZNF160Q9HCG1 818 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 KCNK9Q9NPC2 374 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 DMRT3Q9NQL9 472 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 HCN3Q9P1Z3 774 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 C3orf18Q9UK00 162 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 SNX6Q9UNH7 406 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 OSGIN2Q9Y236 505 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 CELSR2Q9HCU4 2923 aa9.55□□□□□ -0.88
VPS28-204ENST00000526054 CPAMD8Q8IZJ3 1885 aa9.54□□□□□ -0.88
VPS28-204ENST00000526054 IGLV3-12A0A075B6K2 115 aa9.54□□□□□ -0.88
VPS28-204ENST00000526054 NSG1A0A0A6YYJ2 146 aa9.54□□□□□ -0.88
VPS28-204ENST00000526054 ZNF860A6NHJ4 632 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms