RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CDH13P55290 713 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 PMP22Q01453 160 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 NAA30Q147X3 362 aaPredicted RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 PCBP2Q15366 365 aaKnown RBP eCLIP10.76□□□□□ -0.699e-7■■■□□ 15.9
VCAN-212ENST00000515397 ZRSR2Q15696 482 aaKnown RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 EXT1Q16394 746 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 DEPDC1Q5TB30 811 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 ZNF468Q5VIY5 522 aaPredicted RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 SPINK14Q6IE38 97 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 NIPAL1Q6NVV3 410 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 ADGRD1Q6QNK2 874 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 C16orf47Q6ZP98 133 aaPredicted RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 TAOK1Q7L7X3 1001 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 CCDC91Q7Z6B0 441 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 TMEM151AQ8N4L1 468 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 NFAM1Q8NET5 270 aaPredicted RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 ZNF354BQ96LW1 612 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 SIGLEC12Q96PQ1 595 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 TAAR6Q96RI8 345 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 SERINC2Q96SA4 455 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 ZBTB26Q9HCK0 441 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 MMP25Q9NPA2 562 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 SEMA4BQ9NPR2 832 aaPredicted RBP10.76□□□□□ -0.69
VCAN-212ENST00000515397 KLHL1Q9NR64 748 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 TMEM216Q9P0N5 145 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 ZNF180Q9UJW8 692 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 DAPP1Q9UN19 280 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 CLDN16Q9Y5I7 305 aa10.76□□□□□ -0.69
VCAN-212ENST00000515397 HIVEP3Q5T1R4 2406 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 A0A1W2PPM1 405 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 SMIM23A6NLE4 172 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 PRKNO60260 465 aaPredicted RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 SMIM24O75264 130 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 EEDO75530 441 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 IFNA16P05015 189 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 ABHD2P08910 425 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 HIST1H1TP22492 207 aaPredicted RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 CD96P40200 585 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 SSR2P43308 183 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 TSFMP43897 325 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 SLCO1A2P46721 670 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 SLAMF1Q13291 335 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 E2F2Q14209 437 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 AP5B1Q2VPB7 878 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 KHDRBS2Q5VWX1 349 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 LIPJQ5W064 366 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 HIST2H2BCQ6DN03 193 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 OR4C11Q6IEV9 310 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 H3F3CQ6NXT2 135 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 CHSY3Q70JA7 882 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 SCUBE1Q8IWY4 988 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 ZNF321PQ8N8H1 164 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 ARMC2Q8NEN0 867 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 ELP5Q8TE02 316 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 UBE2E3Q969T4 207 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 CMTM7Q96FZ5 175 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 KCNC2Q96PR1 638 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 MRPL57Q9BQC6 102 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 TBCDQ9BTW9 1192 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 NPLQ9BXD5 320 aaPredicted RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 ALOXE3Q9BYJ1 711 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 L2HGDHQ9H9P8 463 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 CLK4Q9HAZ1 481 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 DMRT3Q9NQL9 472 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 PCTPQ9UKL6 214 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 TNPO3Q9Y5L0 923 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 POLEQ07864 2286 aa10.75□□□□□ -0.69
VCAN-212ENST00000515397 SPTBN1Q01082 2364 aaKnown RBP10.75□□□□□ -0.69
VCAN-212ENST00000515397 A0A088AWK7 358 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 TRAV17A0A0B4J275 112 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 TRBV11-1A0A0K0K1C0 115 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 OR5H15A6NDH6 313 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 ANKUB1A6NFN9 424 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 SAGE2PA6NJ88 616 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 GLOD5A6NK44 160 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 GABRR3A8MPY1 467 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 A8MT66 165 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 CLDN4O14493 209 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 PLPP1O14494 284 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 ZNHIT1O43257 154 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 AGFG2O95081 481 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 CLDN9O95484 217 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 CYC1P08574 325 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 PYGBP11216 843 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 COL6A2P12110 1019 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 ZNF10P21506 573 aaPredicted RBP10.74□□□□□ -0.69
VCAN-212ENST00000515397 CPN2P22792 545 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 CNTFP26441 200 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 GSTM2P28161 218 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 CCNG1P51959 295 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 RAP1GDS1P52306 607 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 KCNK10P57789 538 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 OC90Q02509 493 aaPredicted RBP10.74□□□□□ -0.69
VCAN-212ENST00000515397 PCDH1Q08174 1060 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 TGM3Q08188 693 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 TUBA3CQ13748 450 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 MEP1AQ16819 746 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 TSNAXIP1Q2TAA8 658 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 ZNF766Q5HY98 468 aa10.74□□□□□ -0.69
VCAN-212ENST00000515397 FHL5Q5TD97 284 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms